Gene Fnod_0942 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagFnod_0942 
Symbol 
ID5451787 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameFervidobacterium nodosum Rt17-B1 
KingdomBacteria 
Replicon accessionNC_009718 
Strand+ 
Start bp1031981 
End bp1032973 
Gene Length993 bp 
Protein Length330 aa 
Translation table11 
GC content28% 
IMG OID640874702 
ProductCRISPR-associated Cas1 family protein 
Protein accessionYP_001410449 
Protein GI154249624 
COG category[L] Replication, recombination and repair 
COG ID[COG1518] Uncharacterized protein predicted to be involved in DNA repair 
TIGRFAM ID[TIGR00287] CRISPR-associated endonuclease Cas1
[TIGR03641] CRISPR-associated endonuclease Cas1, HMARI/TNEAP subtype 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAAAAG ATATTTATAT TTTTAATAGC GGAGAATTAA AAAGGAAAGA TAATACAATC 
TGTTTCGAAA GTAGTGAGGG GAGAAAATAT TTTCCAATAG AAAATATAAA CAATATATTT 
ATATTTGGTG AGGTCGAATT AAATAAAAGA TTTTTAGATT TTGCCTCAGA AAATGAGATA 
TTAATTCATT TTTTCAATTT TTATGGATAC TATACTGGCA CATTTTACCC CCGCGAACAT 
TTAAATTCTG GATTTGTTAT TTTGAAACAG GCAGAACATT ACTTGGATAA TGAAAAGAGA 
ATGAAATTAG CTCGTAAATT TGTTGAAGGA GCTATAGAGA ATATATTAGT TGTTCTTAAG 
TATTACAAGA ATAGAGGTTG CGAACTTGAA GATGAAATAG ATGATATTAA ATGTAAGAAA 
GAAGGTATAT ATTCATCTCA AGATATTGAA ACATTGATGT CTTTTGAAGG AAATATAAGG 
GATGTATATT ATAAATGTTT TGACAAGATA ACGAAAAAAG ATGAATTTGC TTTCGAAAAA 
AGAAGCAGAA GGCCTCCTTT AAATAAAATG AATTCATTAA TCAGTTTTGG TAATTCTTTG 
CTTTACACAA CCGTTTTAGG TGAAATTTAT CAAACGCAAC TTGATCCACG CATAGGCTAT 
CTCCATTCTA CGAATAGTAG GAAATTTACT CTAAATCTTG ATGTAGCTGA AATTTTTAAG 
CCATCTATAG TTGACAGAGT GATTTTCTCA CTTGTGAATA AAAATGTTTT ATCATATAAA 
GACTTCGATG AGCAATTAAA TGGGATAGTT TTAAATAATT CAGGTAAAAA GAAATTTATA 
GAAGAATATA ATGAAAAGCT TGAAACTGTC TTTAAATATA CAAAGTTAAA TGCTTTTGTT 
AGTTATAAAA GGTTAATTAG ACTTGAAATA TATAAGGTTC AAAAACATAT CACTGAAGAT 
GAAGAATATC AACCTTTCGT TGCGAGGTGG TAA
 
Protein sequence
MKKDIYIFNS GELKRKDNTI CFESSEGRKY FPIENINNIF IFGEVELNKR FLDFASENEI 
LIHFFNFYGY YTGTFYPREH LNSGFVILKQ AEHYLDNEKR MKLARKFVEG AIENILVVLK 
YYKNRGCELE DEIDDIKCKK EGIYSSQDIE TLMSFEGNIR DVYYKCFDKI TKKDEFAFEK 
RSRRPPLNKM NSLISFGNSL LYTTVLGEIY QTQLDPRIGY LHSTNSRKFT LNLDVAEIFK 
PSIVDRVIFS LVNKNVLSYK DFDEQLNGIV LNNSGKKKFI EEYNEKLETV FKYTKLNAFV 
SYKRLIRLEI YKVQKHITED EEYQPFVARW