Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Fnod_0797 |
Symbol | |
ID | 5452187 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Fervidobacterium nodosum Rt17-B1 |
Kingdom | Bacteria |
Replicon accession | NC_009718 |
Strand | - |
Start bp | 873996 |
End bp | 875735 |
Gene Length | 1740 bp |
Protein Length | 579 aa |
Translation table | 11 |
GC content | 31% |
IMG OID | 640874548 |
Product | peptidoglycan-binding LysM |
Protein accession | YP_001410307 |
Protein GI | 154249482 |
COG category | [F] Nucleotide transport and metabolism |
COG ID | [COG0737] 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGTAAGA AATTTATCAC ACTGTTTATG TTCGTACTTT TCGCTCTTTC AACATTTGTT TTAGCGTCGC AAATTATTAT ACTCCACACA TCTAACATTT ATGGAAATGT TTTGCCATAT GATTATTTCA GCAATATGTA TCAGCCAAAA GGTTTAGCTA TTCTTAAGAC ATATGTTGAC AATTTAAGAA GTTCAAATCC AGACACTATT TTAATAGATA CAGGTAATTT GCTCTATGGT TCACCATTTG GTGATTATTC CAGTTTGCAA GAAGATAATC CTGTTATAAA CGCTTTTAAT CTTCTTAATT ACGATGCATT TGTTCCGGGG ACATTTGAGG TGAACTATTC TCCCGAAAGG CTTATAGGTG TTTTTAAAAA TTTGAAAACA AGTGTTTTGG CTGCTAACTT GGCTAATGTA TTTCCAAGTA ACGTTGTAAG CTTCAAAGTG AAAACTATGA GTAACGGATT CAAGGTTGCA ATGATCGGTG TTGTTGTTCC CTACGATTCA CAAAAGTATG TTGATTATAT AGAAAGTGTT AGGAATACGC TGAATACAGC AAAGAAAATG AATCCAGATT TGATTATTCT TGCAACAAGT GGTGGTATAA CAAATGATCC AATCACTGGA AAACAAATAG CAATTAGAAG TGAGTTAAAT ATAGGTGATG AACTTGTAAG AGAATTTTCG AAAGATGTTG ACATATTCTT GTTTGGTAAT CAGGATTTCG TATATACAGG TTCAAAATCG AACAAGATAT ATTCTGTAAC TGGCAGTGAA GCTAAGGGAG TTAATAAGAT TACATTAAAT GTAGAAAAAG ATAAATCTTT TAAGATAAAA AGCGTAAAGA TAGAAAGAGT TTTACTTTCA AATGTGGAAC CATCTGAAAT TGTCTTAAAT CAAGTAAAAA AATTTGAAGG TGATTTTAAT AAGTGGTTAG ACGAAGTAAT TGCGCAATCT AACATCTCTG TTGGATTTAA CAAATACATG GCAATGTTAG ATGATAATTT TGTAACAGAA TTCGTTAATA AGTTGATAAT TAATTACACA AATTCAAACC TAGGAATATG GAATGTATTT AATGCCAATT GTCCAGGTAT ACCACAAGGT GAAATTACAA GAAGAGATTT GTATTCACTT GTTGGAAAAA CGACATCTGT AAAACTAGTT AAAATGACAG GCGCAGATAT AAAGAATTAC ATTTTGACTT CAGCAAAACT TTTGAAATAT AACGGTGTAA GAATTTTGTT TGATGAAAGT TTGACTAATA AACCTTGGCT TTATGATTTG TTTGAAAACA TAAACTACAG CGTCGTTTTG AACGAGAATA AAATAAGAAG CATAAAATAC CTGGGCAGAG ATTTAGATGA CAATTCAGAA GTAATTGTAT CAGTACCATC TGTAAGAACA TACGGTACCA ATCCAATTTT AAGAGGAGAG GTAATTGAAG ATTTTGAAAT TCCTGTTCAG CAGATTATAT TTGAGAATTT AAAAGGCAGA GTTATAGATG GTGCAATGGA CTCGAATTAC TCTGTTTACG TGAAACTTGA GTATGAAGTG AAACCTGGGG ATACATTTAA CCAAATCTTA CAAAGACTTG CCGTGACAGA TTCTGAGTTA CTTGAGTTAA ATCCAATAAT AAAGAATATC AATCTAATAA GACCAGGTTG GAAACTTGTT TATTACAAGA AATACCTAAA CTTAATACCA CCAATCAGAG AATTCTTTGA AGTAAAATAA
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Protein sequence | MSKKFITLFM FVLFALSTFV LASQIIILHT SNIYGNVLPY DYFSNMYQPK GLAILKTYVD NLRSSNPDTI LIDTGNLLYG SPFGDYSSLQ EDNPVINAFN LLNYDAFVPG TFEVNYSPER LIGVFKNLKT SVLAANLANV FPSNVVSFKV KTMSNGFKVA MIGVVVPYDS QKYVDYIESV RNTLNTAKKM NPDLIILATS GGITNDPITG KQIAIRSELN IGDELVREFS KDVDIFLFGN QDFVYTGSKS NKIYSVTGSE AKGVNKITLN VEKDKSFKIK SVKIERVLLS NVEPSEIVLN QVKKFEGDFN KWLDEVIAQS NISVGFNKYM AMLDDNFVTE FVNKLIINYT NSNLGIWNVF NANCPGIPQG EITRRDLYSL VGKTTSVKLV KMTGADIKNY ILTSAKLLKY NGVRILFDES LTNKPWLYDL FENINYSVVL NENKIRSIKY LGRDLDDNSE VIVSVPSVRT YGTNPILRGE VIEDFEIPVQ QIIFENLKGR VIDGAMDSNY SVYVKLEYEV KPGDTFNQIL QRLAVTDSEL LELNPIIKNI NLIRPGWKLV YYKKYLNLIP PIREFFEVK
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