| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Fnod_0644 |
|---|
| Symbol | |
|---|
| ID | 5452623 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Fervidobacterium nodosum Rt17-B1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009718 |
|---|
| Strand | - |
|---|
| Start bp | 708759 |
|---|
| End bp | 710096 |
|---|
| Gene Length | 1338 bp |
|---|
| Protein Length | 445 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 30% |
|---|
| IMG OID | 640874385 |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_001410156 |
|---|
| Protein GI | 154249331 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGTTATTCT ATATTAACCT TTACACTTTC CTTGTTGGTA TATCGAAAGC AGCATATACT
GCTTTATTTA ACTTGTATTT AAAGTCTTTA TCTTATGAAA ACTCTATTAT CGGAAATTCT
ACATTTTATT ACTCTTGGGG ATTAGCTTTT GGAGGACTTC TTTTTTCAAG CATTTCAGAT
AGAATCGGTC GAAAAAAGAC ATTGCTTGTA ACAATGCCTT TATTTTCTCT CGCTGGTTTG
TTAAGGCTGA TACCGACCTC GTATACTTTG CTTTATGTTT TTTCTTTCTT ATTTGGTTTT
TTTGACACTT CAATAATTTT ACCAACAATT TCTGTAATAG AAAGCTCAGA TGAAAAGAAA
AGACTAAGAA ATTCGAATAT GAACTTTGCT ATAGTTATGC TTACAGGTGT TTTGGGATAT
TTTGGTGCAG GTCTTCTGTC AGAGAAAATA GGATTAGTCA ACAGCTTAAG ATTATCTATG
ATTTTAGCGC TATTTTCTAT TCTCCCACTT TTTGCTTTGC CTAATACGAA GTTAAGAGTT
AAAAGAAAAA AATTAAAAAC AAATGGTAAA ATGTACCTAA ATCCTGTGCA ATTAACGATG
TTATTCTATT ACATTTTATC TGGAGCGTTA GTGAGCGCTG CCGCGGCAGT TTTTATAAAC
TTTGGGAATG TGATATTTTT AGATTTATTT TTGTTTTCAA CGACAACCAT AACACTTATC
CTTACTATTT CTCAACTTTC AACGGCTGTA ACATCATTGT TCACCCACAA GTTAACGTCT
AAGTACGGTT ACAAGTTGTT ACTCTTTGTT CTTTATCTTT CGGTAACTTT ACTGATCTTC
ATGATGCCTA TATTTATGTT AAACTCAGCT CTTTTTACCG TTGCTTATAT ACTTAGGTAT
ATTCTGTTAA ACATAACAAC GCCTATGTTT ATGGTTTTCT GTCTATCGTA TCTTCCAAAA
TCTTACTTAG CCACATTTTC AGGTGTAAGT TACTTTATAA ACAACTTAAT GAAAGCATTT
TCCGCTCAAA TATTTACTCA CCTTTCAAAA AGTGGTACAA CAAATTATTC AAAACTCTTT
TTAATCACTG GTACATTTTA TCTTTTAAAC ACTATCATAA CGTTGATAAC CTTTGTTTTG
ATATATATTT TCAAAGATAA AACCGATGAG AAAACACAAA CAACAAAGTT AGAACAAAGT
AAGAAAAATG CTTTTGTTAC ATCAATTAAA GACTTTAAGC ATAGAAGAAT AATTTCTTAT
CAAAAGGATA ATTCTCAAAA ATTAAGTGTT CACATACACA ATAGCACAAC TTTTAAAAAG
AATAAAGATG AAAAGTAA
|
|---|
| Protein sequence | MLFYINLYTF LVGISKAAYT ALFNLYLKSL SYENSIIGNS TFYYSWGLAF GGLLFSSISD
RIGRKKTLLV TMPLFSLAGL LRLIPTSYTL LYVFSFLFGF FDTSIILPTI SVIESSDEKK
RLRNSNMNFA IVMLTGVLGY FGAGLLSEKI GLVNSLRLSM ILALFSILPL FALPNTKLRV
KRKKLKTNGK MYLNPVQLTM LFYYILSGAL VSAAAAVFIN FGNVIFLDLF LFSTTTITLI
LTISQLSTAV TSLFTHKLTS KYGYKLLLFV LYLSVTLLIF MMPIFMLNSA LFTVAYILRY
ILLNITTPMF MVFCLSYLPK SYLATFSGVS YFINNLMKAF SAQIFTHLSK SGTTNYSKLF
LITGTFYLLN TIITLITFVL IYIFKDKTDE KTQTTKLEQS KKNAFVTSIK DFKHRRIISY
QKDNSQKLSV HIHNSTTFKK NKDEK
|
|---|
| |