| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Fnod_0412 |
|---|
| Symbol | |
|---|
| ID | 5452007 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Fervidobacterium nodosum Rt17-B1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009718 |
|---|
| Strand | + |
|---|
| Start bp | 449269 |
|---|
| End bp | 449940 |
|---|
| Gene Length | 672 bp |
|---|
| Protein Length | 223 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 32% |
|---|
| IMG OID | 640874161 |
|---|
| Product | HAD family hydrolase |
|---|
| Protein accession | YP_001409934 |
|---|
| Protein GI | 154249109 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1011] Predicted hydrolase (HAD superfamily) |
|---|
| TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 35 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGAAACTA GGCGCATAAA AAATGTAGTT TTTGACTTGG GAAGAGTTCT CATCGATTGG
CAACCATACG AATATATGAT TAAAAAATTT GGCAAAGAGA CTGCCGAGTT CTTAGAAAGA
GTGATATTTA ACTCCAAAGA GTGGAACTTA ATGGATAAAG GTATAATAAA TGAACATGAG
TTGTGGAATT TGTTTATATA CAAGCACCCA GAATACAAAA TACCTATCGA ACATCTGAAA
GAAAACGTGA CTAATTTACT CATAGAAATA AAAGATAACA CAAAATTATT AGAACCTTTA
AAAGCAATGG GCTACAAACT ATACGTACTT TCTAATTTCA GCGAAATGAA CTTTGCTTAC
GTCTCCAGAA AGTACGATTT CTTCCAAAAG TTCGATGGAA TGGTTATATC AAGCCATGTA
AAGCAAATAA AACCAGATAA AGAAATTTTT GAGATACTTA TAGAAAGGTA CAACATAATT
CCACAAGAAT CGTTATTTGT AGACGATAGA TTGGAGAATA TTCAAACAGC TGAAATCTTA
GGTTTTGAAT TTATACATTT GACAGACCAC ACAAAACTTA GAGAAGAACT CGAAAGAAAA
TTGAATATCA AATTTGATGA AAACAATTTA ACAGGAGAAC AATATGAGAC GACTGCAAAG
TGCTCGAAGT AA
|
|---|
| Protein sequence | METRRIKNVV FDLGRVLIDW QPYEYMIKKF GKETAEFLER VIFNSKEWNL MDKGIINEHE
LWNLFIYKHP EYKIPIEHLK ENVTNLLIEI KDNTKLLEPL KAMGYKLYVL SNFSEMNFAY
VSRKYDFFQK FDGMVISSHV KQIKPDKEIF EILIERYNII PQESLFVDDR LENIQTAEIL
GFEFIHLTDH TKLREELERK LNIKFDENNL TGEQYETTAK CSK
|
|---|
| |