Gene Fnod_0311 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagFnod_0311 
Symbol 
ID5451698 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameFervidobacterium nodosum Rt17-B1 
KingdomBacteria 
Replicon accessionNC_009718 
Strand+ 
Start bp338764 
End bp339741 
Gene Length978 bp 
Protein Length325 aa 
Translation table11 
GC content36% 
IMG OID640874056 
ProductABC transporter periplasmic-binding protein 
Protein accessionYP_001409833 
Protein GI154249008 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG4143] ABC-type thiamine transport system, periplasmic component 
TIGRFAM ID[TIGR01254] ABC transporter periplasmic binding protein, thiB subfamily 


Plasmid Coverage information

Num covering plasmid clones4 
Plasmid unclonability p-value0.00000568515 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAAAGT TCTTGGTTAT TTCTCTACTT TTAGTTGTTT CTTTAGTGAT TATTGCTGCA 
GAGCTTGTTA TTTACACGTC CGATAGCTTT GCTGGAGGTA TAGGAAAAGT TATAGCGCCG 
AAGTTCGAAA AGGTCTACAA ATGCAAAGTT AAAATGATAA GTTTTGGTTC GATGGGAGAT 
GTCTTAGCAA GAATTATCGC CGAAAAAAAT TCACCTAAAG CTGATGTAGT GATAGGCTTA 
AATCCTCAAC AGTTACAAAA GGCCATTAAG GAAGGTGTTC TTGAGAAATA TAGACCAGTT 
AACTCAAAAA ATATTGTTTA TAAGTCTTTA GTTACAGATT ATGGTACTGT TTACGATTAC 
GGTGCACTTG CCATGATTTA CAACGTAGAA AAGATTAAAA ACCCACCACG TTCCTTTAAA 
GATTTACTCA AGCCTGAATA TAAAGGTAAG ATAGTACTTA TCGATCCAAG AACATCAAGT 
ACTGGCTTAA CTTTTCTTAT GTGGACTATC GCTGCATTCG GCGAAGATGA TGCTATGGAA 
TATTGGAAAC AATTAAAAAA TAATGTTTTA ATGTTTACAA GTGGTTGGAG TGCAGCGTTT 
AAGATGATTG AAACAGGGGA AGCAGATATA ATAGTAAGCT ATGCCACAGA TGGTGCTTAC 
AGCATGTACA AGTACGGTTC AATAAAGTAT ATGCCCGTTA TATTCGAAGA AGGAGCATAC 
GTGCTTGAAG AGTATGCCTC AATTGTAAAG GGTGCAAAGA ATCTCGCACT TGCAAGGACA 
TTTTTAGAGT TTATACTAAC ACCAGATTTT CAAAAAGAAG TGCCTCTTAA TCAATGGATG 
ATGCCGGTTA TAAATGTCGA GCTTCCCGAA GTTTTCAAAT ATGTACCAAC ATTTAAGAAA 
ATTCTCAAAG TCAAGCCAGA TGTCAACGAC AGGATAGATG AAGTACTCAA AAAATGGGAA 
AAGGCTGTGA TTGGCTAG
 
Protein sequence
MKKFLVISLL LVVSLVIIAA ELVIYTSDSF AGGIGKVIAP KFEKVYKCKV KMISFGSMGD 
VLARIIAEKN SPKADVVIGL NPQQLQKAIK EGVLEKYRPV NSKNIVYKSL VTDYGTVYDY 
GALAMIYNVE KIKNPPRSFK DLLKPEYKGK IVLIDPRTSS TGLTFLMWTI AAFGEDDAME 
YWKQLKNNVL MFTSGWSAAF KMIETGEADI IVSYATDGAY SMYKYGSIKY MPVIFEEGAY 
VLEEYASIVK GAKNLALART FLEFILTPDF QKEVPLNQWM MPVINVELPE VFKYVPTFKK 
ILKVKPDVND RIDEVLKKWE KAVIG