Gene Fnod_0309 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagFnod_0309 
Symbol 
ID5452659 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameFervidobacterium nodosum Rt17-B1 
KingdomBacteria 
Replicon accessionNC_009718 
Strand
Start bp334889 
End bp336058 
Gene Length1170 bp 
Protein Length389 aa 
Translation table11 
GC content33% 
IMG OID640874054 
Productmajor facilitator transporter 
Protein accessionYP_001409831 
Protein GI154249006 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.0224718 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCTCAAC CTTTGCTTAT AACTTTATTC ACCTTTATCG ATGGACTTGC TCAGGGGATA 
TACGGAACAC TATTTAATTT AGTTTTAAGA CAAAGCGGAG TTCCAACAAG TATTGTTGGA
AAAATAACTT CTAATAGTTT GTGGGGAGCG GCATTTTTTG GATTGGTATT TGGCTTTTTT
GCTGATAAGT TCGATAAGAA AAAACTGATA ATATTTTCGC AATTGTTAGG TATATTTTTT
GGCGTATACC GTGTAATCAC CAAATCTTAT TTTCAACTGA TTATCACTTC GTTCTTTTTT
GGTGGGTTCA CTTCAGCTAC TTCCATAATT TTATCGACTC TCTTAGTTCT TAAAACTGAT
AGTGACAATA GGGCAAAATT TTTTGGTTTA AATTTCGGAG TTGGAATGTT TACCGGAGTT
ATAGGAAATG TTTTGGGTGG AGTACTTGGC GATATGTTTC CAGCAAAATG GGTTCTTATC
ACTGCAAGCC TTTCAAGAAT TTTTGCTATA ATTCCTTTAA GAAAATTGAG GATTCAAAAT
GAAGTAAATC TTAAAAATTC CAATGTTATT GACTTTCAAG AATTTATATC TGTATTTTCT
CCTAAAAAAT CTAAAGTAGT TTTCTACTAT ATGCTATCAA CGATAAGTGT TGGTTTCGGG
GCTGGATTGT TCGTTAGTTT TGGAAATGTC ATATTTTACG ATTTATTCAA AATGAGTGCT
TCCGTTATAG GTATAATTTT AGCTTTGGCG CAATTGGCAA CAAGCCTTGG GGCAGTGTTT
TCTCACAAAC TTGGTAAGAG GTTCGGCGAT ATGAATATAC TTATCTTTTC TTACGTAGTT
GTACCTATAC TTATAGTCTC TTTAAGTTTT GTGAGAGAAC CGATAACATT TACAAGTGTC
TATATAGTTA GATTCGCAGT TATGAACATG GTTAGTCCTT TGCTAAGCGC ACTCGTTTAT
TCAAATGTTA GGCGTGATAA GATTGCAACT ATAAACGGCG CTAATAATTT CGTTAATAAT
GTATCACGTG CTCTGTCTGC TGAGATGTTT TCACTTCTAA CTGCTTTTAA AAATGGTTAT
ACACTTATAT TCGTAATAAG TTCCATTTTC TACTTTGCAA ACGCTTATGT TATGATAAAG
ATGTACAAGC ATATTAAAAA TTCCGTATAA
 
Protein sequence
MSQPLLITLF TFIDGLAQGI YGTLFNLVLR QSGVPTSIVG KITSNSLWGA AFFGLVFGFF 
ADKFDKKKLI IFSQLLGIFF GVYRVITKSY FQLIITSFFF GGFTSATSII LSTLLVLKTD
SDNRAKFFGL NFGVGMFTGV IGNVLGGVLG DMFPAKWVLI TASLSRIFAI IPLRKLRIQN
EVNLKNSNVI DFQEFISVFS PKKSKVVFYY MLSTISVGFG AGLFVSFGNV IFYDLFKMSA
SVIGIILALA QLATSLGAVF SHKLGKRFGD MNILIFSYVV VPILIVSLSF VREPITFTSV
YIVRFAVMNM VSPLLSALVY SNVRRDKIAT INGANNFVNN VSRALSAEMF SLLTAFKNGY
TLIFVISSIF YFANAYVMIK MYKHIKNSV