| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Fnod_0296 |
|---|
| Symbol | |
|---|
| ID | 5452960 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Fervidobacterium nodosum Rt17-B1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009718 |
|---|
| Strand | - |
|---|
| Start bp | 319475 |
|---|
| End bp | 320929 |
|---|
| Gene Length | 1455 bp |
|---|
| Protein Length | 484 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 37% |
|---|
| IMG OID | 640874042 |
|---|
| Product | glucan endo-1,6-beta-glucosidase |
|---|
| Protein accession | YP_001409819 |
|---|
| Protein GI | 154248994 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG5520] O-Glycosyl hydrolase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGAAAACCG AAAAAAGTTT AAAAATAATA ATTCTACTAT CGCTTTTGTT TATCTTAGTA
AACTTATCAT CTAATGTTAC ACAAAAAACA AATCAAAAGG AGATGGCAAA GACAATGAAT
AATGTCAAGC TATGGCTTAC TACTGTTGAC CAAAAATTCA TGTTATCCGA AGTCGATATT
AATAATCCTG TTGTTTCAGA TTTCCGTGAA ACACTAAGGA TTGCAGTTGA TTCGAATAAA
AAATACCAGC AAATGGATGG ATTCGGAGCA TCTCTCACCG ATGCATCAGC ATGGCTAATT
TTCCATAAAT TATCAGAGGA AAAACGTATA GAGGTAATGA AAAAATTGTT CGGCAGAAAT
GAAGGGATAG GAATTTCGTT TCTTAGGCAG CCAATGGGTG CAACTGATTA CACAACTAAG
CTATACAGCT ATGATGATTT GCCAGAAGGT GTAAAAGAAG ACCCAGAACT TAAATATTTC
TCTATCAAAC ACGATAAGCA GTACATAATA CCTCTTTTGA AACTTGCTAT GAAAATAAAT
CCAGAGTTGA AAATAATGGC TTCTCCTTGG AGTGCACCTG GTTGGATGAA GACAACGGGA
AGCATGATTG GTGGATCTCT CCTAAGACAA TATTATAGCG TCTATGCGCA ATATTTTGTA
AAGTTCACAA AAGCATACGA AAAAGAAGGG ATTCCAATTT ACGCAATCAC ACCGCAAAAT
GAACCTTTAT ATGTTCCAAA AGAATATCCA GGAATGAAAA TGACATGGGA AGAGCAAGCG
GATTTCATAG GTGAATACCT TGGACCTGCG TTTGAAAAAG AAGGGATAAA GACGAAGATA
CTGACTTACG ACCACAATTG GGATAATACC ATATACGCAT CGTATGTTTT GTCTCACCCA
AAAGCTTCAA AATACGTTGC AGGCTCAGCG TGGCATTTTT ATGGCGGGAA ACACGAAGCG
ATGAGCCAAA TAAAGGAAAT GTTCCCTGAT AAAGATATAT GGTTTACAGA AGGTTCAGGT
GGTGATTGGG TACCTGCTTT CTTTAATGCA TTTATGGATC AGATGATGCA TGTTATCAGA
ATCCCAAGAA ATTGGTCTAA AACCGTTGTA TGGTGGAATA TAGCATTAGA TGAGAAGAGA
GGACCAACGA TATTATCAAA TAGCACTTGC AGAGGACTTA TAGAGATTAA TCAAGAAACG
GGAGAGGTAA AGTATAATTT GGATTATTAT ACGTTAGGCC ATATAAGTAA ATTTGTTCTT
CCAGGCGCTT ATCGAATAGA TTCATACACA TATAGTAATT TAGAAACAGT GGCTTTTGAA
AATCCAAATG GAACAAAAGT TCTCATAGTC TCGAACCGAA CGAATACAAA CAAAAAAATC
ATAGTCGAGG AGGGAGGGAG AGAATTCGAA TATATAATTC CGGGGTACGC TGCGGTAACT
TTTGTGTGGG ATTGA
|
|---|
| Protein sequence | MKTEKSLKII ILLSLLFILV NLSSNVTQKT NQKEMAKTMN NVKLWLTTVD QKFMLSEVDI
NNPVVSDFRE TLRIAVDSNK KYQQMDGFGA SLTDASAWLI FHKLSEEKRI EVMKKLFGRN
EGIGISFLRQ PMGATDYTTK LYSYDDLPEG VKEDPELKYF SIKHDKQYII PLLKLAMKIN
PELKIMASPW SAPGWMKTTG SMIGGSLLRQ YYSVYAQYFV KFTKAYEKEG IPIYAITPQN
EPLYVPKEYP GMKMTWEEQA DFIGEYLGPA FEKEGIKTKI LTYDHNWDNT IYASYVLSHP
KASKYVAGSA WHFYGGKHEA MSQIKEMFPD KDIWFTEGSG GDWVPAFFNA FMDQMMHVIR
IPRNWSKTVV WWNIALDEKR GPTILSNSTC RGLIEINQET GEVKYNLDYY TLGHISKFVL
PGAYRIDSYT YSNLETVAFE NPNGTKVLIV SNRTNTNKKI IVEEGGREFE YIIPGYAAVT
FVWD
|
|---|
| |