Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Fnod_0181 |
Symbol | |
ID | 5452342 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Fervidobacterium nodosum Rt17-B1 |
Kingdom | Bacteria |
Replicon accession | NC_009718 |
Strand | + |
Start bp | 183941 |
End bp | 186241 |
Gene Length | 2301 bp |
Protein Length | 766 aa |
Translation table | 11 |
GC content | 35% |
IMG OID | 640873928 |
Product | ribonuclease R |
Protein accession | YP_001409705 |
Protein GI | 154248880 |
COG category | [K] Transcription |
COG ID | [COG0557] Exoribonuclease R |
TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases [TIGR02063] ribonuclease R |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.129563 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCCAAAGA AAACGGAATT GAAAAAATTA TTTAGTCAAA AAGAATACAC ACCAATGACA TTCAAGGAGA TTTGCAGATA CTTTGGGATA ATAGAGGATA ATCAGAAAGA ACTTTTGAAA GAGCAACTCA ACGAATTAAT AAATATTGGA TATATATTCA AAGATGATAA TGGTAGGTAT CAACTCTCTA AGGGTAATTT ATTTGTTGGG ACAATAGAAT TTACCAGAAG TGGTAATTTA ACTTTTGTTA CAACAGAAGA TGGTCAAGAG ATAGCGGTAC CAATCGAGAA AACAAATCTT GCGATGCATA AGGATAAAGT CCAAGTTCAG ATTATAGGTA AATGGTACGA ATTACCAGAG GGTAGAGTTG TCAAAATACT GGAAAGAGGA ATAAAAAAAT TCGTTGGTGT TTTTGAAACG CGAGGGCAGT TTGCATATAT CATACCTGAT GATCCAAAAT TACCTTTCGA ATTTAAAGTT CCGATAGAAG ATATAAATGG TGCTAAACCT GGGATGAAAG TAGTGGCTGA AATTACCAAG TATCCAAGTA TAAAAAGAGG GCCGGAGGCA AAAGTTGTTG AAGTACTTGG AAAAGTAGAA GACCCTGCTA CAGATTTTCC AACAGTTGTT GTGAAACATG ACTTACCAGT TCAATTCCCA GATGATGTGA TGGAAGAAGT CTCGAAACTA CCAGATAAAG TTTCTGAAAA GGATTTGGAA GGAAGATGGG ATTTCAGGAA CGAAGTCATC GTAACAATTG ATGGTTTGGA TGCGAAGGAT TTTGATGATG CAGTACATGT TAAGAAGTTA CCAAATGGTA ATTATCTGCT TGGCGTTCAT ATCGCTGATG TTTCGCATTA CGTGAAACCA AATACGGCTC TCGATAGAGA AGCTTTCAAT CGTGCAACGA GCATATACCT TGCAGATAGG GTTATACCGA TGCTACCATT TAAACTATCT AATGGCTTGT GTAGTTTGGT ACAAGGTGAA GACAGATTGG TAATGTCGCT TTTAATGGAA ATTGATAAAA AAGGGGAAGT TGTTGACTAT AAAGTTGGGA ATGGTGTTAT ACGAAGCTAC AGAAGGCTTG TTTACGATGA CGTAAATGCA TTTTTAGAAG GACGTCCTGA GGGTGATAAA CTTAAAGACC TTGCTGAGCA CATTTACCTT ATGAAGGAGC TAAAAGATAT TCTCAGAGAA AATAGAAGAC GTAGGGGAGC TATATTGGAT ATAGAAGGTG ATGAAGTAAA GATTATTTTA GATGAAAAAG GCCATGCAAT TGATATAGTA CCCCGAAAGC GTGGAGAATC AGAGGTAATA ATAGAAGAAT TTATGATAAA AGCTAACGAA ACTGTCGCCG AAATATTCCA TAATGCCGAT ATACCTTTTA TTTATAGAAT TCACGAACAA CCTGACTTTG ATACATTATT CCAGTTGAAA AATTACCTAA GTGCGATAGG TATCAATATG AAACTTCCCC AACAGATTCA TCCTAAGATA CTCCAAGAGC TTTTGGAGAA AACAAAAGAT CATCCTCTTA GAAGTAGTAT TCAAAGGCTT TTGGTTAGAT CTATGAAACG TGCCATTTAC TCGCCAAGCA ATATAGGTCA TTTTGGTTTA GCGTCGGAAG CTTACACGCA CTTTACATCT CCGATAAGAA GGTATCCTGA TCTTATCGTT CATAGATTGT TGAAAAAATA CCTCGAAACT GGAGGAAGTA TTTCTAAAAA AGAGATGAAA AATATTGAAA AATATCTTGA AAAAGCTTCA ATACATTGTA GTAAACGTGA ACGCGTGGCA GACGAAGCCG AATGGGATTA TGAAGCATTA AAGAAGATAG ATTACATATC AAAACATATC GGTGAAGTGT ACAAAGTTGT TGTAACATCT GTTGCCAAAT TTGGTTTATT CGTGGAGATA CCTGATAAAT ATATCTCAGG ACTTATACAC ATTTCCACTT TGGATGATTA TTACTTTTAT GATGAGCAAA AGAGTATTTT AACGGGGAAA CACTCTGGAA AAATCTATAG AATAGGTGAC GTGTTGTACG CAAAAGTTGT TAAGGCTGAT AAGGTAAGGA TGGAAATAGA TTTTGTTGAA GCTTCTTCAG AAGATTCAGC ACTAATGGAA GAAACTGAAC AGATAGTAAA AGAATACGGT GTATCTATAA AGGCTAAATC AAAAGAGAAA TCATCGAAAA AGGCTTTAAA TAAGTCAAAG AGCTATGAGC AAACTGTACA AAAAAGAAAG AAATCAAGCA AAGAATCTAA AACGGGAATG AAAGATAAAA AACAGAAATA A
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Protein sequence | MPKKTELKKL FSQKEYTPMT FKEICRYFGI IEDNQKELLK EQLNELINIG YIFKDDNGRY QLSKGNLFVG TIEFTRSGNL TFVTTEDGQE IAVPIEKTNL AMHKDKVQVQ IIGKWYELPE GRVVKILERG IKKFVGVFET RGQFAYIIPD DPKLPFEFKV PIEDINGAKP GMKVVAEITK YPSIKRGPEA KVVEVLGKVE DPATDFPTVV VKHDLPVQFP DDVMEEVSKL PDKVSEKDLE GRWDFRNEVI VTIDGLDAKD FDDAVHVKKL PNGNYLLGVH IADVSHYVKP NTALDREAFN RATSIYLADR VIPMLPFKLS NGLCSLVQGE DRLVMSLLME IDKKGEVVDY KVGNGVIRSY RRLVYDDVNA FLEGRPEGDK LKDLAEHIYL MKELKDILRE NRRRRGAILD IEGDEVKIIL DEKGHAIDIV PRKRGESEVI IEEFMIKANE TVAEIFHNAD IPFIYRIHEQ PDFDTLFQLK NYLSAIGINM KLPQQIHPKI LQELLEKTKD HPLRSSIQRL LVRSMKRAIY SPSNIGHFGL ASEAYTHFTS PIRRYPDLIV HRLLKKYLET GGSISKKEMK NIEKYLEKAS IHCSKRERVA DEAEWDYEAL KKIDYISKHI GEVYKVVVTS VAKFGLFVEI PDKYISGLIH ISTLDDYYFY DEQKSILTGK HSGKIYRIGD VLYAKVVKAD KVRMEIDFVE ASSEDSALME ETEQIVKEYG VSIKAKSKEK SSKKALNKSK SYEQTVQKRK KSSKESKTGM KDKKQK
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