Gene Fnod_0181 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagFnod_0181 
Symbol 
ID5452342 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameFervidobacterium nodosum Rt17-B1 
KingdomBacteria 
Replicon accessionNC_009718 
Strand
Start bp183941 
End bp186241 
Gene Length2301 bp 
Protein Length766 aa 
Translation table11 
GC content35% 
IMG OID640873928 
Productribonuclease R 
Protein accessionYP_001409705 
Protein GI154248880 
COG category[K] Transcription 
COG ID[COG0557] Exoribonuclease R 
TIGRFAM ID[TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.129563 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCAAAGA AAACGGAATT GAAAAAATTA TTTAGTCAAA AAGAATACAC ACCAATGACA 
TTCAAGGAGA TTTGCAGATA CTTTGGGATA ATAGAGGATA ATCAGAAAGA ACTTTTGAAA
GAGCAACTCA ACGAATTAAT AAATATTGGA TATATATTCA AAGATGATAA TGGTAGGTAT
CAACTCTCTA AGGGTAATTT ATTTGTTGGG ACAATAGAAT TTACCAGAAG TGGTAATTTA
ACTTTTGTTA CAACAGAAGA TGGTCAAGAG ATAGCGGTAC CAATCGAGAA AACAAATCTT
GCGATGCATA AGGATAAAGT CCAAGTTCAG ATTATAGGTA AATGGTACGA ATTACCAGAG
GGTAGAGTTG TCAAAATACT GGAAAGAGGA ATAAAAAAAT TCGTTGGTGT TTTTGAAACG
CGAGGGCAGT TTGCATATAT CATACCTGAT GATCCAAAAT TACCTTTCGA ATTTAAAGTT
CCGATAGAAG ATATAAATGG TGCTAAACCT GGGATGAAAG TAGTGGCTGA AATTACCAAG
TATCCAAGTA TAAAAAGAGG GCCGGAGGCA AAAGTTGTTG AAGTACTTGG AAAAGTAGAA
GACCCTGCTA CAGATTTTCC AACAGTTGTT GTGAAACATG ACTTACCAGT TCAATTCCCA
GATGATGTGA TGGAAGAAGT CTCGAAACTA CCAGATAAAG TTTCTGAAAA GGATTTGGAA
GGAAGATGGG ATTTCAGGAA CGAAGTCATC GTAACAATTG ATGGTTTGGA TGCGAAGGAT
TTTGATGATG CAGTACATGT TAAGAAGTTA CCAAATGGTA ATTATCTGCT TGGCGTTCAT
ATCGCTGATG TTTCGCATTA CGTGAAACCA AATACGGCTC TCGATAGAGA AGCTTTCAAT
CGTGCAACGA GCATATACCT TGCAGATAGG GTTATACCGA TGCTACCATT TAAACTATCT
AATGGCTTGT GTAGTTTGGT ACAAGGTGAA GACAGATTGG TAATGTCGCT TTTAATGGAA
ATTGATAAAA AAGGGGAAGT TGTTGACTAT AAAGTTGGGA ATGGTGTTAT ACGAAGCTAC
AGAAGGCTTG TTTACGATGA CGTAAATGCA TTTTTAGAAG GACGTCCTGA GGGTGATAAA
CTTAAAGACC TTGCTGAGCA CATTTACCTT ATGAAGGAGC TAAAAGATAT TCTCAGAGAA
AATAGAAGAC GTAGGGGAGC TATATTGGAT ATAGAAGGTG ATGAAGTAAA GATTATTTTA
GATGAAAAAG GCCATGCAAT TGATATAGTA CCCCGAAAGC GTGGAGAATC AGAGGTAATA
ATAGAAGAAT TTATGATAAA AGCTAACGAA ACTGTCGCCG AAATATTCCA TAATGCCGAT
ATACCTTTTA TTTATAGAAT TCACGAACAA CCTGACTTTG ATACATTATT CCAGTTGAAA
AATTACCTAA GTGCGATAGG TATCAATATG AAACTTCCCC AACAGATTCA TCCTAAGATA
CTCCAAGAGC TTTTGGAGAA AACAAAAGAT CATCCTCTTA GAAGTAGTAT TCAAAGGCTT
TTGGTTAGAT CTATGAAACG TGCCATTTAC TCGCCAAGCA ATATAGGTCA TTTTGGTTTA
GCGTCGGAAG CTTACACGCA CTTTACATCT CCGATAAGAA GGTATCCTGA TCTTATCGTT
CATAGATTGT TGAAAAAATA CCTCGAAACT GGAGGAAGTA TTTCTAAAAA AGAGATGAAA
AATATTGAAA AATATCTTGA AAAAGCTTCA ATACATTGTA GTAAACGTGA ACGCGTGGCA
GACGAAGCCG AATGGGATTA TGAAGCATTA AAGAAGATAG ATTACATATC AAAACATATC
GGTGAAGTGT ACAAAGTTGT TGTAACATCT GTTGCCAAAT TTGGTTTATT CGTGGAGATA
CCTGATAAAT ATATCTCAGG ACTTATACAC ATTTCCACTT TGGATGATTA TTACTTTTAT
GATGAGCAAA AGAGTATTTT AACGGGGAAA CACTCTGGAA AAATCTATAG AATAGGTGAC
GTGTTGTACG CAAAAGTTGT TAAGGCTGAT AAGGTAAGGA TGGAAATAGA TTTTGTTGAA
GCTTCTTCAG AAGATTCAGC ACTAATGGAA GAAACTGAAC AGATAGTAAA AGAATACGGT
GTATCTATAA AGGCTAAATC AAAAGAGAAA TCATCGAAAA AGGCTTTAAA TAAGTCAAAG
AGCTATGAGC AAACTGTACA AAAAAGAAAG AAATCAAGCA AAGAATCTAA AACGGGAATG
AAAGATAAAA AACAGAAATA A
 
Protein sequence
MPKKTELKKL FSQKEYTPMT FKEICRYFGI IEDNQKELLK EQLNELINIG YIFKDDNGRY 
QLSKGNLFVG TIEFTRSGNL TFVTTEDGQE IAVPIEKTNL AMHKDKVQVQ IIGKWYELPE
GRVVKILERG IKKFVGVFET RGQFAYIIPD DPKLPFEFKV PIEDINGAKP GMKVVAEITK
YPSIKRGPEA KVVEVLGKVE DPATDFPTVV VKHDLPVQFP DDVMEEVSKL PDKVSEKDLE
GRWDFRNEVI VTIDGLDAKD FDDAVHVKKL PNGNYLLGVH IADVSHYVKP NTALDREAFN
RATSIYLADR VIPMLPFKLS NGLCSLVQGE DRLVMSLLME IDKKGEVVDY KVGNGVIRSY
RRLVYDDVNA FLEGRPEGDK LKDLAEHIYL MKELKDILRE NRRRRGAILD IEGDEVKIIL
DEKGHAIDIV PRKRGESEVI IEEFMIKANE TVAEIFHNAD IPFIYRIHEQ PDFDTLFQLK
NYLSAIGINM KLPQQIHPKI LQELLEKTKD HPLRSSIQRL LVRSMKRAIY SPSNIGHFGL
ASEAYTHFTS PIRRYPDLIV HRLLKKYLET GGSISKKEMK NIEKYLEKAS IHCSKRERVA
DEAEWDYEAL KKIDYISKHI GEVYKVVVTS VAKFGLFVEI PDKYISGLIH ISTLDDYYFY
DEQKSILTGK HSGKIYRIGD VLYAKVVKAD KVRMEIDFVE ASSEDSALME ETEQIVKEYG
VSIKAKSKEK SSKKALNKSK SYEQTVQKRK KSSKESKTGM KDKKQK