Gene Fnod_0159 details

Gene Information

• Locus tag: Fnod_0159
• ID: 5452593
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Fervidobacterium nodosum Rt17-B1
• Kingdom: Bacteria
• Replicon accession: NC_009718
• Strand: +
• Start bp: 162846
• End bp: 164690
• Gene Length: 1845 bp
• Protein Length: 614 aa
• Translation table: 11
• GC content: 37%
• IMG OID: 640873906
• Product: ATP-dependent metalloprotease FtsH
• Protein accession: YP_001409683
• Protein GI: 154248858
• COG category: [O] Posttranslational modification, protein turnover, chaperones
• COG ID: [COG0465] ATP-dependent Zn proteases
• TIGRFAM ID: [TIGR01241] ATP-dependent metalloprotease FtsH

Plasmid Coverage information

• Num covering plasmid clones: 16
• Plasmid unclonability p-value: 0.794037
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

TTGAATCGTA ACATTGGATC GGTAATTTTT CTAATACTAA TTGCACTCTC TTTATTTTGG 
ATTTACGAAG GTTTTATAAA TTCTAAGGGT GCAATAGAGC TTAACATGAG TTACAGTGAC 
TTTATAAAAC GAGTCAGTAA CAGTGAAACG GATATAGCTG AAGTGGTTAT AAAAGATGAT 
GGTAATCTGA GTATAAAGAC AAAGCAAGGA AGATCGTATT CTGTTTATGC TCCTTGGTTT 
AGATACGATA TAGAGACAAT TAACAAGCTT GTTGAATATG GAATAGTGAT TCAAGGTGAA 
AGAGTTACAG ATAGCAGTTT TTGGGTAAAT GTTATTGGAA ATATCGCGAT TTTTATAGTT 
ACTCTATTAC TTTTTGCGTT TATAATTCGC GGTCTTGGAC GTGGAAATAA CCAGGCATTT 
ACCTTCACAA AAAGTAGGGC GGAGAAGGTC AATCCTAATA AAATAAAAGT AACATTTAAG 
GATGTAGCTG GTGTAGATGA GGCTGTTGAA GAACTCAAAG AAACCGTTGA GTTTTTGAAA 
AATCCTGGAA AATTTACAAA AATTGGGGCA AGAATGCCGA AAGGTATTTT ACTCGTTGGA 
CCTCCGGGTA CTGGTAAGAC ATTACTTGCA CGTGCTGTTG CTGGAGAAGC AAACGTTCCT 
TTCTTCCACA TAAGTGGTTC TGATTTTGTT GAATTGTTTG TCGGTGTTGG TGCGGCAAGG 
GTAAGAGATT TATTTGAGCA AGCGAAGGCT AATTCTCCTT GTATAGTTTT TATAGATGAA 
ATTGACGCTG TTGGTAGGCA TAGAGGTGCA GGTCTTGGCG GAGGTCATGA TGAAAGGGAA 
CAAACCCTAA ACCAATTGTT AGTTGAAATG GATGGTTTTG ACGTTAATCA AGCTATTGTA 
GTAATGGCCG CAACGAATAG GCCAGATATA CTTGATCCTG CACTGTTAAG ACCTGGAAGG 
TTTGATAAGA AAGTTGTTGT TGATCCACCA GATGTAAAAG GAAGAGAAGC TATATTGAAA 
ATACATTTAA GAAATAAACC TATAGATAAA GATGTTGATG TCTCTGTACT TGCTAAACGC 
ACAACGGGAT TTGTTGGCGC TGATCTTGAA AATTTGGTAA ACGAAGCAGC ATTGTTAGCC 
GCAAGAGATG GTAGAAATGT CATTAAGATG AACGATTTTG AGGAAGCAAT AGATAGGGTT 
ATAGCCGGAC CTGCTAGAAA ATCGAGAGTT ATCTCCGAAA AGCAGAAGAA GATAGTTGCT 
TATCATGAAG TAGGACATGC GATAATAAGC TCTTCATTAC CAAATTCAGA TCCTGTTCAC 
AGAATATCAA TAACACCACG TGGTTACGCA GCTCTTGGAT ACACATTACA TTTACCTGCT 
GAAGACAAGT ACTTAGTTAG TAAAAACGAA CTACTCGATA ATATAACGAC ACTTTTAGGT 
GGTAGAGCAG CTGAAGAGCT AGTTTTTGGC GATTTTACAA GTGGGGCAGC AAACGATATT 
GAAAGAGCTA CCGAAATAGC AAGAAAGATG GTTTGTGAAT ATGGAATGAG TGATAATTTT 
GGACCTTTAG CTTGGGGTAA GACGGAACAA GAAGTATTCC TTGGCAAAGA ATTGACAAGG 
ATAAGAAATT ACAGTGAAGA AGTTGCTAAA ATGATAGACC ACGAGATTCA AAATATCATA 
AAATCTTGCT ATGAGCGTGC AATGGATATT TTAACTAAGA ATAGGGAAAA AATGGAACAA 
ATAGTTGCAG TTTTGTTGGA ACGTGAAGTA ATGAGTGGTG AAGAACTAAG AGCAATGCTT 
AATGGGAACG AAAGTGGATT AGACACTAAT TTACAAGAAG CGTAA 

 

Protein sequence

MNRNIGSVIF LILIALSLFW IYEGFINSKG AIELNMSYSD FIKRVSNSET DIAEVVIKDD 
GNLSIKTKQG RSYSVYAPWF RYDIETINKL VEYGIVIQGE RVTDSSFWVN VIGNIAIFIV 
TLLLFAFIIR GLGRGNNQAF TFTKSRAEKV NPNKIKVTFK DVAGVDEAVE ELKETVEFLK 
NPGKFTKIGA RMPKGILLVG PPGTGKTLLA RAVAGEANVP FFHISGSDFV ELFVGVGAAR 
VRDLFEQAKA NSPCIVFIDE IDAVGRHRGA GLGGGHDERE QTLNQLLVEM DGFDVNQAIV 
VMAATNRPDI LDPALLRPGR FDKKVVVDPP DVKGREAILK IHLRNKPIDK DVDVSVLAKR 
TTGFVGADLE NLVNEAALLA ARDGRNVIKM NDFEEAIDRV IAGPARKSRV ISEKQKKIVA 
YHEVGHAIIS SSLPNSDPVH RISITPRGYA ALGYTLHLPA EDKYLVSKNE LLDNITTLLG 
GRAAEELVFG DFTSGAANDI ERATEIARKM VCEYGMSDNF GPLAWGKTEQ EVFLGKELTR 
IRNYSEEVAK MIDHEIQNII KSCYERAMDI LTKNREKMEQ IVAVLLEREV MSGEELRAML 
NGNESGLDTN LQEA