| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Fnod_0104 |
|---|
| Symbol | |
|---|
| ID | 5453130 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Fervidobacterium nodosum Rt17-B1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009718 |
|---|
| Strand | - |
|---|
| Start bp | 107028 |
|---|
| End bp | 108170 |
|---|
| Gene Length | 1143 bp |
|---|
| Protein Length | 380 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 640873850 |
|---|
| Product | aminotransferase class V |
|---|
| Protein accession | YP_001409628 |
|---|
| Protein GI | 154248803 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0075] Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGTTAAGA AAAACTTATT GCTTGCTCCA GGACCAACAC CGGTACCACA CGAAATACTC
CTTGAAGGTG CAAAAGAAAC AATTCATCAC AGAACACCAC AGTTTGTAAA AATATTGGAA
GAGACTCTTG AATTAACAAA ATATGTTTTT CAAACACAGT ATCCTGTTTA TGTATTAACC
GCATCTGGAA CCGGTGCACT TGAAACCGCG ATGGTAAACC TCGTAAATCC TGGCGAAAAG
GCTATCATCG TTAGTGCCGG TAAATTCGGT GAAAGATGGG TTGAAATTGC AAAGGCTTAC
GGTATCGTAC CAGTGGAAAT TAAACTCCCA TGGGGTAAAG CAGTAACACC AGAGATGATT
GAAAAAGCAA TGAAAGAAAA CCCAGATGCA AAAGTTGTCT TTACAACGTA CAGTGAAACA
TCAACAGGTA CAGTTATTGA CCTTGAAAAT ATCGCGAAGT TAACAAAAGG CACAGATGTT
ATATTAGTAA CAGACGCTGT CAGTGGATTG CTAGCTGAAC CATTGAAAAT GGATGAATGG
GGAGTTGACG TAGTTGTCTC AGGCGCTCAA AAAGGTTGGA TGCTCCCTCC AGGATTGGCT
TTCATAGCTA TCAACGACAA AGCATATGCC AAGGTAGAAA AATGTACAAA CAGCAGATAC
TATTTCGACT TGAGGAAATA CAAGAAGAGC TCACCAGACA ATCCATGGAC AACAGCAGTA
AACTTAATCT ACATGCTTAA CAAAGCCGTT AAAATGCTTA AAGAAGAAGG CATTGAAAAC
GTTTGGGCAA GGCACGCTCT ATACGGTGAA GCGACAAGAG CAGCCGTTAA AGCTCTTGGA
TTAACATTCT TCTCCGAAAG ACCAGGTAAT GTCCTTACCG CTGTTAATTC ACCAGAAGGT
ATTCCAGCAA GTAAAATTAC GAAATTGATG AGGGACAAAT ACGGCGTTAC AATAGCCGCA
GGTCAAGAAC CAATGAAAGA TGAATTATTC AGGATTTCAC ACCTTGGATA CGTTACACCA
TTCGACATAA TCACAGGTAT AACAGCCTTG GAATTCGCAC TTAGTGAACT TGGTTACAAA
GTCGAGATAG GAAAAGGAGT CCTAGCCGCT GAAGAAGTTC TCTTCAAAGG GTTGGTGAAA
TAA
|
|---|
| Protein sequence | MVKKNLLLAP GPTPVPHEIL LEGAKETIHH RTPQFVKILE ETLELTKYVF QTQYPVYVLT
ASGTGALETA MVNLVNPGEK AIIVSAGKFG ERWVEIAKAY GIVPVEIKLP WGKAVTPEMI
EKAMKENPDA KVVFTTYSET STGTVIDLEN IAKLTKGTDV ILVTDAVSGL LAEPLKMDEW
GVDVVVSGAQ KGWMLPPGLA FIAINDKAYA KVEKCTNSRY YFDLRKYKKS SPDNPWTTAV
NLIYMLNKAV KMLKEEGIEN VWARHALYGE ATRAAVKALG LTFFSERPGN VLTAVNSPEG
IPASKITKLM RDKYGVTIAA GQEPMKDELF RISHLGYVTP FDIITGITAL EFALSELGYK
VEIGKGVLAA EEVLFKGLVK
|
|---|
| |