| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Fnod_0018 |
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| Symbol | |
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| ID | 5453093 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Fervidobacterium nodosum Rt17-B1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009718 |
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| Strand | + |
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| Start bp | 17594 |
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| End bp | 19282 |
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| Gene Length | 1689 bp |
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| Protein Length | 562 aa |
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| Translation table | 11 |
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| GC content | 36% |
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| IMG OID | 640873768 |
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| Product | sigma-54 dependent trancsriptional regulator |
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| Protein accession | YP_001409548 |
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| Protein GI | 154248723 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.00000232366 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAAAGAA TCTTAAAGTT TGTTCTGGAT TCAGTTATTG AAGGGATTAT TCTTGTTGAC
AAAGATGCAA AAGTAGTTTA TGTAAATAAC AACGCATGCA AGCTTTTAGG ACTGAACCCG
GATATAATCG GGCGACCTGT TGAAGAAGTT GTCAATAACA CACGGTTACA TATTGTTGTT
CGTAACGGAA TACCGGAAAT AGATCAAGTC CAGTATACTG GTAATGCTAT AATCATAACC
TCGAGAATAC CATTACGTGA TGAGAATGGG AATATACTTG GTGCGGTTGC TGTGTTCAGA
GATATAACAA GCATTAGAAA ATTAGCAGAG GAAATTACAA ACCTTAAAGA AATTGAAGCT
CAGCTAAAGG CAATCATAGA ATCAACAAAT GATGCTATTA GTGTAGCTGA TGAAAATGGA
ATTGTGCGCC TTGTTAATAA AGCTTATACA AGAATTACAG GTTTTTCTCC AGAGGAAGTA
ATTGGTAAAC CAGCAACAGT AGATATAGCT GAAGGTGAAA GTATACACAT GCTTATAGCT
CGCACTAGGC AGCCTATATA TAACGCAAGG TTGAAAGTCG GACCAGCGAA AAAAGAAGTT
ATAGTTAATG CCACTCCACT TTTCGTAAAA GGACAATTCA AAGGCAGTGT TGCAGTTGTG
CATGATGTTT CTGAAATTCT ACAACTGACA AATGAACTTG AAGAAGTAAA GAGATTAATT
CGATATATGA AAGCTCAATA TACTTTTGAT GACATAATCG GTGATAGTAA ATTAATTCAA
ATAGCTAAGG AACAAGCAAA GAAAGTTGCC CAAACACCTG CTACAGTTCT ATTGAGAGGA
GAAAGTGGAA CGGGAAAAGA ATTATTTGCC CACGCAATTC ACAATTCGAG CCCAAGAAGA
TCAAAACCCT TTGTAAGTGT TAACTGTGCA ACGATACCTG AATCGATACT TGAATCTGAA
CTTTTCGGAT ACGAAGAAGG AGCGTTTACC GGTGCACTGA GAGGTGGGAA AAAAGGACTA
ATTGAAGAAG CAGATGGTGG AACATTATTT CTTGATGAAG TTGGGAAATT GCCTCTACCT
CTACAACCTA AATTGTTAAG ATTTATAGAA ACAAAAGAAT TTGTACCAGT TGGAGGTAGA
AATGTAAGAA AAGTAGATGT GAGAATAATC GCAGCTACAA ATGTTGACTT AGAAAAAATG
GTAAAGAACG GAGAATTTCT ACCAGACCTT TATTTTAGAT TAAATGTATT TCCTATATAC
CTTCCAGCTT TAAAAGATAG AAAAGAAGAT ATTCCGAAGC TTGCTTTACA TATAGTCAAA
AAACTTAATC AACAATACGG TCGCATGGTT GAAGGAATCA ATCCAACAGT TCTTAAATAC
TTAGTAAATA TGGACTGGCC TGGCAATGTT CGAGAACTTG AGAATTTCTT GGGAAGAGTT
ATGATAAATA TGGGACCTGA GGAAAGAGTG ATTGAACCAA AGCACTTGCC TGAAAATATT
GAATTAAAGA GAACAAAGGC TAAAGAAGCA ATTTCCATAG GTTCCCTGAA AGAGCTTATA
GAAGATTATG AGAAAAAGAT AATAGCAGAG GCACTTAAGA AGACAGGAGG TAACAAGGAA
GAAACAGCAA AATTGTTGGA TATAAGTATA AGAACATTGT ATTATAAGAT AGAAAAGTAC
GGTTTATAG
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| Protein sequence | MERILKFVLD SVIEGIILVD KDAKVVYVNN NACKLLGLNP DIIGRPVEEV VNNTRLHIVV
RNGIPEIDQV QYTGNAIIIT SRIPLRDENG NILGAVAVFR DITSIRKLAE EITNLKEIEA
QLKAIIESTN DAISVADENG IVRLVNKAYT RITGFSPEEV IGKPATVDIA EGESIHMLIA
RTRQPIYNAR LKVGPAKKEV IVNATPLFVK GQFKGSVAVV HDVSEILQLT NELEEVKRLI
RYMKAQYTFD DIIGDSKLIQ IAKEQAKKVA QTPATVLLRG ESGTGKELFA HAIHNSSPRR
SKPFVSVNCA TIPESILESE LFGYEEGAFT GALRGGKKGL IEEADGGTLF LDEVGKLPLP
LQPKLLRFIE TKEFVPVGGR NVRKVDVRII AATNVDLEKM VKNGEFLPDL YFRLNVFPIY
LPALKDRKED IPKLALHIVK KLNQQYGRMV EGINPTVLKY LVNMDWPGNV RELENFLGRV
MINMGPEERV IEPKHLPENI ELKRTKAKEA ISIGSLKELI EDYEKKIIAE ALKKTGGNKE
ETAKLLDISI RTLYYKIEKY GL
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