| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Xaut_5074 |
|---|
| Symbol | |
|---|
| ID | 5420360 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xanthobacter autotrophicus Py2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009717 |
|---|
| Strand | - |
|---|
| Start bp | 297453 |
|---|
| End bp | 298283 |
|---|
| Gene Length | 831 bp |
|---|
| Protein Length | 276 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640873728 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_001409508 |
|---|
| Protein GI | 154243935 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.00987994 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.377928 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATTGTT CCTCAATCCA ACCCATTTCA TCCAGCTCTC GCGCCTGCGG GCCGGCAAGA
AGCATCTGGT CGGACTATGA GCCAGCGTGT GGTCGAGGTG ACCGGAGCGG CCTCGGCAAT
GGGCTGACTA TTGCGTCGAG ACTGCTGTCG CGAGGTGATT CCGTTGTCGC CTTCGACGTC
TCGGCGAAGG CACTGGTTGA GTGTGAGGCC GAGCAATGGG CCGATCACCG CGATGCCGTG
TTGACGATGT CGGGCGATGT TTCGGATGAA GCTGATGTCT ACCACCTGAT CGATCAGGCC
TTGAAGCGGC GTGGAAAGGG GGACGTGCTG GTCAACAACG CGGGCATCAC CGGCAGCCAA
TTCGCCTCGG ACGTACACAC GACACCGGTG TCCGAATTCG ACAAGGTGAT GGCGGTGAAC
GTGCGCGGTG TCTTTCTGGG TTGTCACGCG GTCCTGCCCC ACATGCTTGA ACGCCGGACC
GGCGTGATCG TCAACGTCGC CTCTGCGGCG GGTTTTGTTG CGTTCCCGAA ACGCGCTGCC
TACACGACGT CCAAAGGTGC CGTAATGCAA CTGACGCGAT CGATGGCTGT AGACGATGCC
CATGCCGGGA TCCGCTGCAA CGCCCTGTGC CCCGGGATGA TCGAGACGCC GATGACAAAG
TGGCTGCTCG ATCAACCTGA TCTACGCACG CAAGTGTTGG CACGCATCCC TCAGAACGAG
ATCGGAACGG AGGACGACGT AGCAGCAGCC GCGGAGTTTC TCCTGAGTGA AGGCGCTCGC
TACATGAACG GCTCGGCGCT GGTGATGGAC GGCCGATATC TGGCGATCTA G
|
|---|
| Protein sequence | MNCSSIQPIS SSSRACGPAR SIWSDYEPAC GRGDRSGLGN GLTIASRLLS RGDSVVAFDV
SAKALVECEA EQWADHRDAV LTMSGDVSDE ADVYHLIDQA LKRRGKGDVL VNNAGITGSQ
FASDVHTTPV SEFDKVMAVN VRGVFLGCHA VLPHMLERRT GVIVNVASAA GFVAFPKRAA
YTTSKGAVMQ LTRSMAVDDA HAGIRCNALC PGMIETPMTK WLLDQPDLRT QVLARIPQNE
IGTEDDVAAA AEFLLSEGAR YMNGSALVMD GRYLAI
|
|---|
| |