| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Xaut_5003 |
|---|
| Symbol | |
|---|
| ID | 5420347 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xanthobacter autotrophicus Py2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009717 |
|---|
| Strand | + |
|---|
| Start bp | 220737 |
|---|
| End bp | 225353 |
|---|
| Gene Length | 4617 bp |
|---|
| Protein Length | 1538 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 640873658 |
|---|
| Product | Ti-type conjugative transfer relaxase TraA |
|---|
| Protein accession | YP_001409438 |
|---|
| Protein GI | 154243865 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0507] ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member |
|---|
| TIGRFAM ID | [TIGR02768] Ti-type conjugative transfer relaxase TraA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGCCATCA TGTTCGTCAG GGCGCAGGTG ATCAGCCGGG GGGCGGGACG CAGCATCGTC
TCGGCCGCTG CCTATCGCCA TCGCGCCCGG ATGATGGACG AACAGGTCGG CACATCCTTC
AGCTATCGGG GCGGAGCGTC CGAACTGGTG CATGAAGAGC TGGCGCTGCC GGACGACATC
CCGGCCTGGC TCGAGGTAGC GATTGCCGGA AAGTCGGTAG CCGGGGCCAG CGAGGTGCTG
TGGAATGCGG TCGACGTGTT CGAGAGGCGG GCGGACGCGC AGCTCGCCCG TGAGTTGATC
ATCGCGCTGC CGGAGGAGCT CAGCCGGGCC GAGAACATCG CGCTGATGCG CGAGTTCGTG
CTGGACAACT TCACATCGAA GGGCATGGTC GCCGACTGGG TCTATCACGA CAAGGACGGC
AACCCGCACG TCCATCTGAT GACGATGCTG CGGCCGCTCG CGGCGGACGG CTTCGGTGGG
AAGAAGGTCC CGGTGCTCGG GGAAGACGGA CAGCCGCTCC GGGTGGTCAC GCCCGATCGG
CCCAATGGCA AGATTGTCTA CAAGCTGTGG GCCGGCGACA AGGAAACCAT GAAAGCGTGG
AAGATCGCCT GGGCGGAAAC CGCCAACCGG CATCTGGCGC TCGCCGGCCG TGAGGTCCGC
CTCGACGGAC GCTCCTATGC CGAGCAGGGC CGCGACGGGA TCGCGCAAAA ACATCTGGGG
CCGGAAAAAG CGGCGCTCGC CCGCAAGGGC GTCGAGATGT ACTTCGCGCC GGCCGACCTC
GCCCGGCGGC AGGAGATGGC CGATCGCCTT GCCGCCGATC CGGGCCTGCT CCTCCAGCAG
CTCAGCAACG AACGGTCCAC CTTTGATGAG CGCGATATGG CCCGCGCGCT CCATCGCTAC
GTCGATGATC CTGAGGATTT CGCCACGATC CGGGCCCGGC TGATGGCCTC GCCCGAGCTC
GTCACGCTGC GCCCGCAGAA GCTCGATCCC GAGACGGGGA AGGCGGCGGA GCCAGCGATC
TTCACGACGC GCGAGATGCT GCGCGTCGAG CACGGTATGG CCGGTTCCGT GGATAACCTC
GCGCAGCGCG ACGGCTTCGG TGTTGCTGCG GCGCGTGTCG CCGCAGCGAT AAAGAGCGTC
GGGAGCGGGG CGCCCGACAG GCCGTTCAAG CTCGACGCGG AACAGGTCGA TGCCGTCCGT
CACGTCACGT CGGACTCGGC GATCGCGGCC GTCGTCGGTC TCGCCGGTAC CGGCAAATCG
ACGCTGCTCG CCGCCGCACG CATCGCCTGG GAAAGCGACG GGCGCCGGGT TCTCGGCGCG
GCGCTCGCCG GCAAGGCGGC AGAGGGCCTG GAGGACAGTT CCGGCATCAC ATCGCGCACG
CTCGCGTCAT GGGAACTGGC CTGGGCTGGC GAGCATGAAC GCCTCGGGCG GGGCGACGTA
CTCGTCATCG ACGAGGCCGG GATGGTGTCC TCGCAGCAGA TGGCGCGGGT GCTGAAGATC
GCCGAGGAGG CGCGGGCGAA GGTCGTTCTG GTGGGCGACG CCATGCAGCT CCAGCCGATC
CAGGCCGGGG CCGCATTCCG GGCCATCGTG CAGCGGATCG GCTTTGCCGA GCTTGCCGGC
GTCCGTCGCC AGCGGGAGGA ATGGGCGCGC AATGCGTCCC GGCTGTTTGC GCGCGCCGAG
GTCGAGACCG CCCTCGACGC CTATGCGCAG CATGGCCATA TCATCGAGGC CGCGACACAC
GAGGCCGCCA TCGGCCGGAT CGTCACCGAC TGGACCGAGG CCCGGCGCAC GCTCGCCGGC
AAGACATCGG CCGAGGGCGA TCCCCAACCC CTGCGTGGGG ACGAACTGCT CGTCCTCGCC
CATACCAATG AGGACGTGAG GCGCCTCAAC GATGCGCTGC GCAAGGTGCT GACCGACGAC
GGCGCGCTAT CGGCGAGCCG CTCGTTCGCG ACCGAACGGG GGACGCGCGA GTTCGCCGTT
GGCGATCGCA TTATCTTCCT CGAGAATGCG CGGTTCGTGG AGCCGCGGGC CAAGCACCTC
GGGCCGCAGC ACGTCAAGAA CGGCATGCTC GGCACGGTGA TGTCGAGCAC CGACAAAAGC
GGCCGGACAC TCCTTGCGGT CCGCCTCGAC AACGGGCGCG AGGTGGTCTT CGGCGAGGAC
ACCTATCGCA ACGTCGACCA CGGCTATGCC GCGACCATCC ACAAGGCCCA GGGCGCGACC
GTGGACCGCA CCTTCGTGCT CGCCACGGGC ATGATGGACC AGCATCTGAC CTATGTAGCG
ATGAGCCGTC ACCGCGATCG GGCTGACCTC TATGCGGCCC AGGAAGACTT CGAGCCCCGT
TCCGAATGGG GCCGGGTGGC GCGGGTCGAT CACGCCGCCG GCGTCACGGG CGAGCTCGTC
GAGACCGGTC GGGCGAAATT CCGTGAGGGC GCGGATGTCG CTCCGAGCCC CTATGCCGAT
GTCCGGACCG AGGATGGAGC GACACGGCGG CAGTGGGGCG TCAGCCTGCC CGCCGCGTTC
GAGAAGGGTG GCGTGAGCGT GGGAGACACC ATCACCTTGC GCAAGGACGG CGTCGAGACC
ATCACCGTGA GGATCCCGGT GACGGACGAG GAGACGGGTG AGAGGCGTCT TGAGGAGCGC
CAGGTCGCGC GCAACGTCTG GACCGCGAAG CAGGTCGAAA CCGCAGATGA CCGCACAGAG
CGCCTCGAAC AGGAAAGCCA TCGCCCGGGC CTCTTCAAGC AGCTGGTCGA GCGCCTGTCG
CGATCGGGGG CAAAGACCAC CACGCTCGAC TATGAAAGCG AGCCCTCATA CCAGGCGCAC
GCCCGTGACT TCGCGCGGCT GCGCGGCATT GACCAGCTCG CCGAGGCCGC GGCCGGGATG
GAGGAGGGGA CGGCGCAGCG GTTGGCGTGG CTGGCCGAGA AGCGGGGCGA GCTGGGGAAG
CTGTGGGAGC GGGCGAGCGT CGCGCTCGGC TTTGCGATCG CCCGCGAGCG CAGCGTCGTC
TACAGCGACC AGCCTGTCGA CATGCCGGCC CGGGAGCCCG CCGATGCGGG CCGCTACCTG
CTGGCGCCGG TGTCGCGCTT TGCGCGATCG GTGGAAGAAG ACGCGCGTCT GGCGCAGATC
GCCTCGCCGG CGGTGAAGGA GCGGGAAGCG GCGCTGCGGC CGGTGCTGGA GCGGATCTAC
CGCGATCCCG AAGCGGCGAT GACCAAGCTC CACGATCTGG CCTCCGCGTC GAAGACCGGT
TCGCGGGCGC TCGGCGACGT CCTGGCGCGG AGCCCGGAGC AGCTCGGCCT CCTGCGCGGC
AGCGCTGCCC TTGTCGACGG GGGGGCCGCG CGCCGCGAAC GCGCCACGGC GCAGAAGGCT
GTCACGGAGG AGCTGGTGCC GCTCGCCCGC GCCCATGCCG TGGCGTTCAA GAGGAGCGCG
GCTTCGTTCG AGATCCGGGA GGAGCGGCGG CGCGCCTCGA TGACGCTGTC GGTGCCCGCC
CTCTCGGAAA GGGCGATGGC GCGGCTCGGC GAGATCGAGG CCGTGCGCGC GCACGGAGGG
GCGGATGCCT ATAAGACGGC CTTTGCCCTG GCCGCCGAGG ATCGCGCGAT CGTACAGGAG
ATCAAGGCGG CCAACGAAGC ATTGACCGCG CGCTTTGGTT GGAGCGCCTT CACCGAGAAA
ACCGACTCCG TCGCGGAGCG CAATATAGCT GATCGCCTGC CGGAGGACAT GGACCTGCAG
AAGCGGGCGG AGCTGAAAAC CCTGTTTAAG TCGGTGCGCA GGTTCGCCGG CGCCCAACAC
CAGGCGGAGC GGCAGGATCG CTCGCGCATC GTCGCGCCGG CGCCCTATCA GTCCGACGCC
GGGAACACCC TTCCGCCCAT GCTTCCGGCG GTGACGGAAT TCCGGCAGCC GGTGGAGGAC
GAGGCGCGGC AGCGGGCGCT GGACACTTCC CACTATCGGC AGCAGCGGGC CGCGCTTGGG
GCGATCGCAT CGCGCATCTG GCGTGACCCG GCGGCCGCGG TCGGGAAGAT CGAGGACCTC
ATCGTCAAAG GCTTCGCGGC GGAGCGCATC GCGGCCGCCA TGTCCAATGC GCCCGATGCC
TATGGCGCTG TGCGAGGCTC GGGCCGGATG ATGGATCGGC TGCTCGCCAC CGGCCGTGAG
CGCAAGGAGG CCCTTGCCGC GCTCCCCGCC GCGGCGGCGG AGCTGCGGGC GCTCGGCTCA
GCCTATGGCG GAGCGCTCGA GGCCGAGGTG AAGACGATCG CCGAGGAGCG ACGGCTGATG
GCGGTCGCCA TCCCTGGCCT CTCGAGGCCG GCGCAGGAGG CCTTGGGGCG GCTGACCGCC
GAGGCGAAGC AGAATACCCG CGGCCTGAAC GCCATGGTCG GCGCGCTCGA TCCGAAGATC
CGCGAGGAGT TCGCGGCCGT GAGCCAGGCG CTTGATACGC GCTTCGGGCG CAATGCGATC
GCGCGCGGCG AGAAGGATGC GGCCAACCGC GTGCCGCCGG CGCATCGGGA GGCCTTCGAG
ACAATGCGCG CCTCGCTGCG CGTGCTGCAG CAGTCGGTCC GGATCGACGC CGACGAGAAG
ATCCTCTCCG AGCGGCGGAT ACGGACGATC AACCAGGCCA GAGGGCTCAC CAGGTAG
|
|---|
| Protein sequence | MAIMFVRAQV ISRGAGRSIV SAAAYRHRAR MMDEQVGTSF SYRGGASELV HEELALPDDI
PAWLEVAIAG KSVAGASEVL WNAVDVFERR ADAQLARELI IALPEELSRA ENIALMREFV
LDNFTSKGMV ADWVYHDKDG NPHVHLMTML RPLAADGFGG KKVPVLGEDG QPLRVVTPDR
PNGKIVYKLW AGDKETMKAW KIAWAETANR HLALAGREVR LDGRSYAEQG RDGIAQKHLG
PEKAALARKG VEMYFAPADL ARRQEMADRL AADPGLLLQQ LSNERSTFDE RDMARALHRY
VDDPEDFATI RARLMASPEL VTLRPQKLDP ETGKAAEPAI FTTREMLRVE HGMAGSVDNL
AQRDGFGVAA ARVAAAIKSV GSGAPDRPFK LDAEQVDAVR HVTSDSAIAA VVGLAGTGKS
TLLAAARIAW ESDGRRVLGA ALAGKAAEGL EDSSGITSRT LASWELAWAG EHERLGRGDV
LVIDEAGMVS SQQMARVLKI AEEARAKVVL VGDAMQLQPI QAGAAFRAIV QRIGFAELAG
VRRQREEWAR NASRLFARAE VETALDAYAQ HGHIIEAATH EAAIGRIVTD WTEARRTLAG
KTSAEGDPQP LRGDELLVLA HTNEDVRRLN DALRKVLTDD GALSASRSFA TERGTREFAV
GDRIIFLENA RFVEPRAKHL GPQHVKNGML GTVMSSTDKS GRTLLAVRLD NGREVVFGED
TYRNVDHGYA ATIHKAQGAT VDRTFVLATG MMDQHLTYVA MSRHRDRADL YAAQEDFEPR
SEWGRVARVD HAAGVTGELV ETGRAKFREG ADVAPSPYAD VRTEDGATRR QWGVSLPAAF
EKGGVSVGDT ITLRKDGVET ITVRIPVTDE ETGERRLEER QVARNVWTAK QVETADDRTE
RLEQESHRPG LFKQLVERLS RSGAKTTTLD YESEPSYQAH ARDFARLRGI DQLAEAAAGM
EEGTAQRLAW LAEKRGELGK LWERASVALG FAIARERSVV YSDQPVDMPA REPADAGRYL
LAPVSRFARS VEEDARLAQI ASPAVKEREA ALRPVLERIY RDPEAAMTKL HDLASASKTG
SRALGDVLAR SPEQLGLLRG SAALVDGGAA RRERATAQKA VTEELVPLAR AHAVAFKRSA
ASFEIREERR RASMTLSVPA LSERAMARLG EIEAVRAHGG ADAYKTAFAL AAEDRAIVQE
IKAANEALTA RFGWSAFTEK TDSVAERNIA DRLPEDMDLQ KRAELKTLFK SVRRFAGAQH
QAERQDRSRI VAPAPYQSDA GNTLPPMLPA VTEFRQPVED EARQRALDTS HYRQQRAALG
AIASRIWRDP AAAVGKIEDL IVKGFAAERI AAAMSNAPDA YGAVRGSGRM MDRLLATGRE
RKEALAALPA AAAELRALGS AYGGALEAEV KTIAEERRLM AVAIPGLSRP AQEALGRLTA
EAKQNTRGLN AMVGALDPKI REEFAAVSQA LDTRFGRNAI ARGEKDAANR VPPAHREAFE
TMRASLRVLQ QSVRIDADEK ILSERRIRTI NQARGLTR
|
|---|
| |