| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Xaut_5000 |
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| Symbol | |
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| ID | 5420358 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Xanthobacter autotrophicus Py2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009717 |
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| Strand | - |
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| Start bp | 218087 |
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| End bp | 219994 |
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| Gene Length | 1908 bp |
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| Protein Length | 635 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640873655 |
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| Product | conjugal transfer coupling protein TraG |
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| Protein accession | YP_001409435 |
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| Protein GI | 154243862 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3505] Type IV secretory pathway, VirD4 components |
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| TIGRFAM ID | [TIGR02767] Ti-type conjugative transfer system protien TraG |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.763698 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGGGGC GTCTGAACCC GACGCTGCTC CATGTTCTCG TGCCGATCGC CGTCACGGCC
ATGACGGTCT TCGTCAGCGG CTGGCGATGG CAGAATCTCG CCGTGGGCAT GTCCAGCAAG
ATCGCCTATT GGTTTCTGCG CGGGGCGCCG CTGCCTGCCC TTCTGCTGGG TCCCCTCGCC
GGGCTCCTGA CCGTCTGGGC GCTGCCGCTG CACCAGCGCC GGCCGATCGC CATGGTGACG
CTCCTGTGCT TTCTCGGCGT GGCCGGCTTC TACGCCTTGC GCGAATATGG CCGCCTCGGA
CCGTTCGTCG AGAGCGGAAC CATCCCATGG GACCGGGCGC TGTCGTACCT CGATGCTTTC
GCCGTCGTCG GTGCCATCGT TGGATTTCTG ATCGTGGCCG TGGCGGCCCG CATCTCCGTT
GTCGTTCCCG ATCCGGTCAA GCGCGCGAAG CGGGCGGCTT TCGGCGATGC GGACTGGTTG
TCCCTGTCGG CGGCCGGGAG GCTGTTCCCG GCGGACGGGG AGATCGTGAT CGGCGAGCGC
TATCGCGTCG ATCGGGAGAT CATCCACGAG CTGCCGTTCG ATCCCATGGA CCGGTCCACC
TGGGGCCAGG GCGGACATGC TCCGCTTCTG ACCTACAAGC AGGATTTCGA TTCCACCCAT
ATGCTGTTTT TCGCCGGCTC CGGCGGCTTC AAGACGACGA GCAATGTTGT CCCCACGGCC
CTGCGCTATT CCGGTCCGCT GATCTGCCTC GATCCCTCGA CCGAGGTCGC GCCGATGGTG
CGCGAGCATC GCATGCGCGC GCTCGGCCGG GAGGTCATGG TGCTCGATCC CACCAATCCG
GTCGCCGGCT TCAACGTGCT CGACGGCATC GAGGGATCGC GGCAGAAGGA AGAGGACATC
GTCGGCATCG CGCACATGCT GCTCTCCGAG AGCCTGCGCT TCGAATCCTC GACCGGCGCC
TATTTCCAGA ACCAGGCGCA CAACTTTCTG ACCGGGCTTC TGGCGCACGT GATGCTCTCG
CCCGAATATG CCGGCCGGCG CAATCTGCGC AGCCTGCGCC AGATCGTGTC CGAGCCGGAG
CCATCCGTGC TCGCCATGCT CCGCGATATT CACGAGCACT CCGAGTCCAC GTTCATCCGC
GAGACGCTCG GCGTGTTCAC GAACATGACC GAGCAGACGT TCAGCGGCGT CTTTTCCACC
GCCTCGAAGG ACACGCAGTG GCTCTCGCTC GACAATTACG CCGCCCTCGT CTGCGGCAAT
GCCTTCAGGT CGCGCGACAT CGTCTCCGGC AAGAAGGACG TCTTCCTCAA TATCCCGGCG
TCGATCCTGA GGTCCTATCC CGGCATCGGC CGGGTCATTA TCGGCTCGCT CATCAACGCC
ATGGTGCAGG CCGATGGCGC CTTCGCGCGC CGCGCCCTCT TCATGCTCGA TGAGGTGGAC
CTGCTCGGCT ACATGCGGGT CCTGGAAGAG GCCCGCGATC GCGGCCGCAA GTACGGCATC
ACGCTGATGA TGATGTACCA ATCGGTCGGT CAGCTGGAGC AGCATTTCGG CAAGGCCGGA
GCGACATCGT GGATCGATGG CTGCGCCTTC GCCTCCTACG CCGCGATCAA GGCGCTGGAG
ACCGCGCGTA ACGTCTCGGC GCAGTGCGGC GAGATGACGG TCGAGGTTCA GGGCCAGTCG
CGCAATGTGG GCTGGAGCAG CTCGAGCAAT GGCGACCGGC GCTCGGAAAG CGTCAGCTTC
CAGCGCCGGC CGCTCATCAT GCCGCATGAG ATCACCCAGT CGATGCGCAG GGACGAGCAG
ATCATCATCG TGCAGGGGCA CAGTCCGATC CGCTGCGGGC GGGCGATCTA TTTCCGGCGC
AAGGACATGA ATGCGGAGGC CAAGGCCAAC CGCTTCGTCA AGGTGTGA
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| Protein sequence | MKGRLNPTLL HVLVPIAVTA MTVFVSGWRW QNLAVGMSSK IAYWFLRGAP LPALLLGPLA
GLLTVWALPL HQRRPIAMVT LLCFLGVAGF YALREYGRLG PFVESGTIPW DRALSYLDAF
AVVGAIVGFL IVAVAARISV VVPDPVKRAK RAAFGDADWL SLSAAGRLFP ADGEIVIGER
YRVDREIIHE LPFDPMDRST WGQGGHAPLL TYKQDFDSTH MLFFAGSGGF KTTSNVVPTA
LRYSGPLICL DPSTEVAPMV REHRMRALGR EVMVLDPTNP VAGFNVLDGI EGSRQKEEDI
VGIAHMLLSE SLRFESSTGA YFQNQAHNFL TGLLAHVMLS PEYAGRRNLR SLRQIVSEPE
PSVLAMLRDI HEHSESTFIR ETLGVFTNMT EQTFSGVFST ASKDTQWLSL DNYAALVCGN
AFRSRDIVSG KKDVFLNIPA SILRSYPGIG RVIIGSLINA MVQADGAFAR RALFMLDEVD
LLGYMRVLEE ARDRGRKYGI TLMMMYQSVG QLEQHFGKAG ATSWIDGCAF ASYAAIKALE
TARNVSAQCG EMTVEVQGQS RNVGWSSSSN GDRRSESVSF QRRPLIMPHE ITQSMRRDEQ
IIIVQGHSPI RCGRAIYFRR KDMNAEAKAN RFVKV
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