Gene CCV52592_1565 details

Gene Information

• Locus tag: CCV52592_1565
• Symbol: ligA
• ID: 5406507
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Campylobacter curvus 525.92
• Kingdom: Bacteria
• Replicon accession: NC_009715
• Strand: +
• Start bp: 736921
• End bp: 738885
• Gene Length: 1965 bp
• Protein Length: 654 aa
• Translation table: 11
• GC content: 52%
• IMG OID: 640872184
• Product: NAD-dependent DNA ligase LigA
• Protein accession: YP_001408016
• Protein GI: 154174322
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II)
• TIGRFAM ID: [TIGR00575] DNA ligase, NAD-dependent

Plasmid Coverage information

• Num covering plasmid clones: 4
• Plasmid unclonability p-value: 0.0182697
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGAAAATT TTATGCGAAT CGATTCAAAA GAGAGCTATG AAAATGCGGT GGCTACGCTA 
AATGCGTGGG CGAAGGCCTA TTACGACGAC GACGCGCCGA TAGCCAGCGA CGAGGAGTAC 
GACGCTCTTT ACCACGAGGT CCTGGCCTAC GAGCAGGTAA ATCCCGCCCA AAAATCGCTA 
TTCTCGCCGA CTACCAGGAT AGGCGGAGGC GTCAGCGAAG GCTTTAGCAA GGCTAGGCAC 
ATCAAGCAGA TGTGGAGCAT GGAGGATATT TTTAGCCAGT TGGAGCTTGT CGCGTGGCTA 
AAACGCGGTG AGAAGCAAAA TTTAAGCTTT GTAGCCGAGC CGAAATTTGA CGGAGCGAGC 
CTAAATTTAC TCTATGAAAA GGGCATGCTG GTAAGGGCCA TAACGCGCGG AGACGGCATC 
ACGGGCGAAG AGGTCACGCA AAACGCTCGC GTGATAAAGT CTATCCCGCT AAACATCTCT 
TACGATGGCC GCATCGAGAT CCGCGGCGAG GTCGTCATAA AAAAGGCCGA TTTTGACGCG 
ATAAACGAGG AGCGCACGCG AAACGGCGAG ACCCTGCTCT CAAACCCTAG AAATGCGGCT 
GCAGGCAGCT TGCGACAGCT AGATAGCGCC GTGACAGCCA AAAGAAAGCT ACTTTTCATC 
CCTTGGGGCG TGGGCGAGCA AAATTTAGGG CTTGCCAAGC ATAGCGAAGT GATGAAATTC 
GTACGCGATC TTGGCTTTTA TAGGGATGAT TTTTTTAAAA TTTTGGACGC CGACGGTCTG 
GCGGGCGCTT ATAACGAGCT TCTTAAACAG CGCGACGAAA AGGACGTGAT GATGGACGGC 
ATGGTGATCC GCGTGGACGA TCTGGCGCGC TGCGAGGAGC TGGGCTACAC GGTGAAATTC 
CCAAAATTTA TGGTCGCGTT TAAATTCCCC GCGATCGAAA AAACCACTAG GCTGCTTGAC 
GTGGCACTTC AGGTAGGCAG AAGCGGCGTC GTGACGCCTG TTGGCGTGCT TGATGAGGTC 
GTCATCGACG GAGCGCGCGT GAAATCAGCC ACTTTGCATA ACTTTGACGA GATCGAGCGC 
CTTGGCGTGA TGAAAAACGA TCTTATAAGC ATCATCCGCT CAGGAGACGT GATACCAAAG 
ATAACAAGCG TCTTTAAAGA GCGTAGAGAC GGCACGCAAA CGCCAATAAT ACGGCCAAAA 
TTTTGCCCCG AGTGCGGCTC GCATCTGCTT GACGAGGGCG TTTTCATAAA GTGTCAAAAT 
CTAAACTGCC GCGCTCGCGT GATAAACTCG ATCATACATT ACGCCTCCAA AAAATGCCTA 
AACATCGATG GGCTGGGCGA GGCGATCATA AATTTGCTCT ATGAAAAAGG GTTGATATCT 
CGCGTCATCG ATATATATTC ACTAAAATTT GAGGATCTGA TGGCGCTTGA AGGCTTTAAA 
GACAAAAAGG CGCAAAACCT GCTTGACGCG ATAGAGGCGA GCAAGGGCGC GAGTCTAGCG 
CGCTTCATCA CCGGGCTTGG CTGCGAGCAT ATCGGCGAGG TGGCGGCTAA AAAGATCGCG 
CAAAATTTCG GCGAGGGCTG GCTGGAGGCC GACTTTGACG AGGTAAAAAA TTTAGAGGGT 
TTTGGCGAGG AGATGGCAAA TAGCTTGATG GATTTTATAG AGGTCAATAA AGATGAAATT 
TTGGCCCTGC AAAGCATCGT TCGTCCGAGC TTTGAGCGCA AGCAGATCAC GCAAAACGCC 
TTTAGCGGCA AAAGCGTCGT GATAACGGGC ACGCTAAGCC GACCAAGAGA CGAGATCAAA 
GCCGAGCTTG AGGGCTACGG CGCAAAGGTA GTAGGCTCGG TCTCTAAAAA AACGGACTTC 
GTGCTGGCAG GAAGCAACGC CGGAAGCAAG CTGCAAAAAG CCGTGGAGCT TGGCGTTCGC 
GTGATCGACG AGGGCGAGTT TGAGAGGCTG AAGCTTGAGA TTTGA 

 

Protein sequence

MENFMRIDSK ESYENAVATL NAWAKAYYDD DAPIASDEEY DALYHEVLAY EQVNPAQKSL 
FSPTTRIGGG VSEGFSKARH IKQMWSMEDI FSQLELVAWL KRGEKQNLSF VAEPKFDGAS 
LNLLYEKGML VRAITRGDGI TGEEVTQNAR VIKSIPLNIS YDGRIEIRGE VVIKKADFDA 
INEERTRNGE TLLSNPRNAA AGSLRQLDSA VTAKRKLLFI PWGVGEQNLG LAKHSEVMKF 
VRDLGFYRDD FFKILDADGL AGAYNELLKQ RDEKDVMMDG MVIRVDDLAR CEELGYTVKF 
PKFMVAFKFP AIEKTTRLLD VALQVGRSGV VTPVGVLDEV VIDGARVKSA TLHNFDEIER 
LGVMKNDLIS IIRSGDVIPK ITSVFKERRD GTQTPIIRPK FCPECGSHLL DEGVFIKCQN 
LNCRARVINS IIHYASKKCL NIDGLGEAII NLLYEKGLIS RVIDIYSLKF EDLMALEGFK 
DKKAQNLLDA IEASKGASLA RFITGLGCEH IGEVAAKKIA QNFGEGWLEA DFDEVKNLEG 
FGEEMANSLM DFIEVNKDEI LALQSIVRPS FERKQITQNA FSGKSVVITG TLSRPRDEIK 
AELEGYGAKV VGSVSKKTDF VLAGSNAGSK LQKAVELGVR VIDEGEFERL KLEI