| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHAB381_1537 |
|---|
| Symbol | |
|---|
| ID | 5408312 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Campylobacter hominis ATCC BAA-381 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009714 |
|---|
| Strand | - |
|---|
| Start bp | 1473666 |
|---|
| End bp | 1475366 |
|---|
| Gene Length | 1701 bp |
|---|
| Protein Length | 566 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 28% |
|---|
| IMG OID | 640871208 |
|---|
| Product | putative hemolysin activation protein HecB |
|---|
| Protein accession | YP_001407069 |
|---|
| Protein GI | 154148959 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG2831] Hemolysin activation/secretion protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.395998 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGTTTAT TTATTATTTT TATTTTATCT GTAATTACCA TTTTTGCAAA TACACTGGAT
GATATTTCTC AAACTCAAGC CAAGCAGGAA GAAGATAGAT TAAAGTTTAT AGAAAGCCAA
AAAGAGAGTT CAAATATTAT TTTAACTCCC AAACAAAATC AAATTTCAGC CATTATCCCA
AATGAAAATC CTTGCTTTGA AATTGATGAA GTGTTACTGA TCGGCAATGA AAGCGATAAA
TTTAAAAAAT ATCTTAGAAA AGCTCTGAAA GAAGTAGGCT TTAAATACAG AACCTGTATA
GGGCAAGAGA GTATAAATAT TATTTATAAC GCTTTTTATA ATGAAATTTT AAAAGCCGGA
TTTATTACGA CTTACGTAAA TTTACCTTCT CAAAATTTAA AAAGTAAAAC TCTAAAATTT
GAAATAATAC CAGGAAAAAT AGACACTATT AATATAAATG ATAAAAATTC CACTAAAAAT
AAAATTTCAT TATTCGGTGC ATTCGGCGGA GATAAAAAAG ATAAAAATTT AAATTTAAGA
GATATCGAAC AAGCTCTTGA AACCATTCAA AACGCTTCTT TAGGTAAAGT TTCCGTAGAA
ATTTTACCGT CTAAAAAAGA AAATTATAGC AATATAAATA TTTCAAAAGA TGAAAAAAGT
CCGTTAAGCT TTTCTTTATC ATTTGATAAT TTAGGAAGTA AAGAAACAGG AAAATATCAG
GGCGGACTTA ATATTAATGC TTTAAATTTA CTTGGTTTTA ATGAAATTTT TTACTCATCT
TTTTCAAAAA ATATATTTAA AACCGATGAA CAAAATATCA ACGATGAAAG CCGAAGAGGA
GGAAGCGATA ATATTTATTA CGGACTTTCG GTTCCGTTTG ACAGATTTTT ACTTGATTTT
AACGAATACG GATATAATTA CGATCAAGCA ATCCTTGGAG CTTTTGGAGT TTATAAATAT
AGCGGAAAAA GTAAAAGAAG AAATTTAACT TTAAATTATT TATATTATAG AGATCAAATT
TCAAAAAATA GTTTATTTTT TAGACTTTGG GAAAAAGAGA ATAAAAACTA TATAGAAGAT
TATGAATTAG ACAATCAAAG AAAAAAAACT GCAGGTTATG AAGCAGGACT AAACTCACAA
TTTTTTATAG AAAACGGCTT TTTATCTTTA GGATTATCAT ACAAAAAAGC AACTGGTGCA
AGAGGGTCTT TACAGGCTCC TGAAGAAGAA TACAATGAAG GAACAAATAG ATTTGAAACT
ATAAGTTCCG ATATTCGTTT TAGAAAAAGT GGAACAAATA TACCGCTTAC TTATGATCTC
AATATTCATT CAATGTGGAA TAAAACTCCT CTAACCTTGC AGGAAAGATT AAATATCGGC
GGATACTACA GCGTAAGAGG ATTTGACGGT AAAATGAGCC TGGTAGGAGA TAGAGGGTAT
TATATAAGAA ATACTTTGGA ATACGGCATA TTTAATAATC ATTTTATTTA TGCAGCTTTT
GACTTTGGCA AGGTAGGCGG AAAAAGTTCA AATTATATGA CTGATAATAC TTTAATCGGC
TCAGGTATCG GTTTAAAAGG AAATTTTAAC AAATACGGCT CACTCTCTTA TGATGCTTTG
CTTGGATTTC CTATAAAAAA ACCTGAATTT TATGAAAGCA ATGATGCCGT TTTAAATTTT
TCTATAAATT ATAATTTTTA A
|
|---|
| Protein sequence | MRLFIIFILS VITIFANTLD DISQTQAKQE EDRLKFIESQ KESSNIILTP KQNQISAIIP
NENPCFEIDE VLLIGNESDK FKKYLRKALK EVGFKYRTCI GQESINIIYN AFYNEILKAG
FITTYVNLPS QNLKSKTLKF EIIPGKIDTI NINDKNSTKN KISLFGAFGG DKKDKNLNLR
DIEQALETIQ NASLGKVSVE ILPSKKENYS NINISKDEKS PLSFSLSFDN LGSKETGKYQ
GGLNINALNL LGFNEIFYSS FSKNIFKTDE QNINDESRRG GSDNIYYGLS VPFDRFLLDF
NEYGYNYDQA ILGAFGVYKY SGKSKRRNLT LNYLYYRDQI SKNSLFFRLW EKENKNYIED
YELDNQRKKT AGYEAGLNSQ FFIENGFLSL GLSYKKATGA RGSLQAPEEE YNEGTNRFET
ISSDIRFRKS GTNIPLTYDL NIHSMWNKTP LTLQERLNIG GYYSVRGFDG KMSLVGDRGY
YIRNTLEYGI FNNHFIYAAF DFGKVGGKSS NYMTDNTLIG SGIGLKGNFN KYGSLSYDAL
LGFPIKKPEF YESNDAVLNF SINYNF
|
|---|
| |