| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHAB381_1446 |
|---|
| Symbol | |
|---|
| ID | 5409036 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Campylobacter hominis ATCC BAA-381 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009714 |
|---|
| Strand | - |
|---|
| Start bp | 1391084 |
|---|
| End bp | 1393183 |
|---|
| Gene Length | 2100 bp |
|---|
| Protein Length | 699 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 32% |
|---|
| IMG OID | 640871118 |
|---|
| Product | leukotoxin translocation ATP-binding protein LktB |
|---|
| Protein accession | YP_001406985 |
|---|
| Protein GI | 154147938 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG2274] ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain |
|---|
| TIGRFAM ID | [TIGR01846] type I secretion system ABC transporter, HlyB family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.0404979 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGAACTG CTCTGCAGGC GCTTGCACTT ATTACTCAAA TAAATAGAAT TCCGTTTGAT
TCTAAAGAAA TAATAAATAA ATTTGCATTG AATACAAACG AACCAAGCAT TGACGAGCTT
ACAAGAATTG CAAAATATTT GGAATTTAAA GCAAAAATCA AAAATATATC TGAAATTTCA
AAATATAAAC CTCCTTTTAT AGCACAATCC AAACAAAACA CATATTTTGT AATTTTCCAA
ATTTTAGAAG ACGGATCATT TTTGATTTAT GATGGCGGGA GCAGCTTAAA AAAGATAAAC
AAAGATGAGA TGAATGAAAT TTCAAATTCC AAAATAATAG TTTTGGCTCA TAAAGCTTTA
AATTCTCAAG TCAAATTCGG CTTTGCATGG TTTTATAAAA AGATGCTGAA ATTTAAATTT
ATAATTTTTG AAGTTTTACT AGCCTCTTTT ATAATGCAGC TTTTTGGGCT TGTTACGCCG
CTTTTTACAC AAGTAGTTCT TGATAAGGTT TTAACTCATC ATAGCATTAG CACTTTAAAT
GTTATCGCGG TAGCATTTTT CGCAGTTATT ATTTTTGAAA TGCTACTCTC TCTTACCAGA
AATTATATAT TTGCTCACAC TACGACAAAA ATTGATGCGC AGCTTGGAAG CGAACTGTTT
TTGCACCTTT TATTGCTTCC GATGACATAT TTTGAAAACA GAAAAGTAGG AAACATAGCG
GCAAGAGTAA GAGAGTTAGA TAGCATAAGA GATTTTATTG CAAACAAATC GGTTACCGTG
CTGCTTGATC TTCTTTTTAG CTTTGTTTTT GTCATTATGA TGCTACTTTA CAGCGTAAAA
CTTACACTTA TAGCAATAGC TTTTGTAAGT GTAATTGCTT TGATTTATTT TTTTATTACA
CCGATGCTAA GAGCAAGACT TAATGACAAA TTTGAGATGG GAGCAAGGTC AAATTCTTAT
TTGATAGAGT CAATCACTGG AATGCAAACC GTAAAATCTC TTGCAATTGA GGGTGGAATG
CAAAGAAACT GGGAAGATTA TTTAGCAAAA TATGTAAAAT CAAGTTTTAA TCTTTCGAAT
TTAAGCAATA TCGCAAGTGG ATTTGCAAAC GCTCTTTCAA AGCTTATGAC TTTATCTATT
TTATATTTTG GTGTAGGGCT TGTAATAGAA GGAAAATTAA GCGTAGGCCA ACTTATCGCT
TTTCAAATGT TTGCAGGGCA ATTTGCGTCT CCTGTAATGA GACTTGTAGG TCTTTGGAAT
GAATTTCAAC AAGCGATTAT AAGTGTGGAT AAATTAGGCG ATATATTAAA TACGCCGACT
GAACAAACAA CAAATAAACC GATAAGTTTA AATAAAGTAA GAGGTGAAAT AAAATTTGAA
AATGTAAGCT TTAGATACAA CCCTGGTTCT AATTTGGTTC TTAAAAATTT AAGTTTTAAG
ATAGATGCAA ATAAAAGTGT AGGCATAGTA GGAAAAAGCG GAAGCGGCAA AAGCACGATT
ACAAAACTAA TCGAAAGGCT TTATTTACAA AATGACGGTG CTATTTATAT TGATGATATT
GATATAAGAC ATCTCAATCC ATATATTTTA AGGCAAAATA TAGGCGTAGT TTTACAAGAA
AATTATCTTT TTAGCGGCAC AATAAGAGAA AATATATCTT ATGCAAAAGC CGACGCTTCT
ATGGACGAGA TCATAAAAGT AGCCAAAATA TCTGGAGCGC ACGATTTTAT AAAAGAGCTT
TCATCAGGAT ATGATACGAT AGTAGGAGAA AGAGGAAGCT CTCTTTCAGG CGGGCAAAAG
CAAAGAATCG CGATAGCAAG AGCGATTATT TCCAACCCTA AAATTTTAAT ATTTGACGAA
GCGACATCTG CGCTTGATTA TGAAAGCGAA AAAGCAATAA CTGAAAATTT AAATAAAATA
AAAGAAAATA GAACATTCAT CATCATCGCT CATAGACTTT CTACGATAAG AAATTGTGAC
GAAATAATAG TAATAGATAA AGGTGAAATT AAAGAACGCG GAAGCCACGA TGAATTGGTA
GCCAAAAATG GATATTATAA AAAATTGCTT GATGCACAAG CAGGGCTCAA TCATGTTTAA
|
|---|
| Protein sequence | MRTALQALAL ITQINRIPFD SKEIINKFAL NTNEPSIDEL TRIAKYLEFK AKIKNISEIS
KYKPPFIAQS KQNTYFVIFQ ILEDGSFLIY DGGSSLKKIN KDEMNEISNS KIIVLAHKAL
NSQVKFGFAW FYKKMLKFKF IIFEVLLASF IMQLFGLVTP LFTQVVLDKV LTHHSISTLN
VIAVAFFAVI IFEMLLSLTR NYIFAHTTTK IDAQLGSELF LHLLLLPMTY FENRKVGNIA
ARVRELDSIR DFIANKSVTV LLDLLFSFVF VIMMLLYSVK LTLIAIAFVS VIALIYFFIT
PMLRARLNDK FEMGARSNSY LIESITGMQT VKSLAIEGGM QRNWEDYLAK YVKSSFNLSN
LSNIASGFAN ALSKLMTLSI LYFGVGLVIE GKLSVGQLIA FQMFAGQFAS PVMRLVGLWN
EFQQAIISVD KLGDILNTPT EQTTNKPISL NKVRGEIKFE NVSFRYNPGS NLVLKNLSFK
IDANKSVGIV GKSGSGKSTI TKLIERLYLQ NDGAIYIDDI DIRHLNPYIL RQNIGVVLQE
NYLFSGTIRE NISYAKADAS MDEIIKVAKI SGAHDFIKEL SSGYDTIVGE RGSSLSGGQK
QRIAIARAII SNPKILIFDE ATSALDYESE KAITENLNKI KENRTFIIIA HRLSTIRNCD
EIIVIDKGEI KERGSHDELV AKNGYYKKLL DAQAGLNHV
|
|---|
| |