Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CHAB381_1400 |
Symbol | |
ID | 5408687 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Campylobacter hominis ATCC BAA-381 |
Kingdom | Bacteria |
Replicon accession | NC_009714 |
Strand | - |
Start bp | 1334692 |
End bp | 1340442 |
Gene Length | 5751 bp |
Protein Length | 1916 aa |
Translation table | 11 |
GC content | 32% |
IMG OID | 640871077 |
Product | putative adhesin |
Protein accession | YP_001406949 |
Protein GI | 154149446 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport [W] Extracellular structures |
COG ID | [COG5295] Autotransporter adhesin |
TIGRFAM ID | [TIGR03157] CRISPR-associated protein Csc2 |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | TTGCTAAAGA TACTTCAGCA ACTAGGAGAC ATAACTTATA AAGTTAATGT TAAATTAGAT GAATATGCTA AATCAACTGA CATAGATACA AAACTTGGTG ATTATGTAAA ATCAGTAACA GGTGATGACT TTATCAAAGT AGACGCAACC AAAAAACAAA GCCCAGCTTT ATCTCTTGAT ACAGATAAGC TTGCAAACGA TAGCACATTT GTAACAAACA TTGCAGGAAA TAAGGTATTT AAAAATACAT ATGTAACAAA TGAAAATTTG GAAAAAGGCT ATACAAAACT TGATGGAACA AATCTATTTA AAGATAATAC TTTAAATGAA TTAAATCCAA ATTTCAAAAA AGACAATTGG AGAAAAGCTC TTGATATAAG TGACGCTAAT ATTCAAAAGC TAGCTCAAAA ATCTGTTGTA GTAGCAAATG GAGAAAACAC AACAGTTGCT AAAGATACTT CAGCAACAGG AGACATAACT TATAAAGTTA ATGTTAAATT AGATGAATAT GCTAAATCAA CTGACATAGA TACAAAACTT GGTGATTATG TAAAATCAGT AACAGGTGAT GACTTTATCA AAGTAGACGC AACCAAAAAA CAAAGCCCAG CTTTATCTCT TGATACAGAT AAGCTTGCAA ACGATAGCAC ATTTGTAACA AACATTGCAG GAAATAAGGT ATTTAAAAAT ACATATGTAA CAAATGAAAA TTTGGAAAAA GGCTATACAA AACTTGATGG AACAAATCTA TTTAAAGATA ATACTTTAAA TGAATTAAAT CCAAATTTCA AAAAAGACAA TTGGAGAAAA GCTCTTGATA TAAGTGACGC TAATATTCAA AAGCTAGCTC AAAAATCTGT TGTAGTAGCA AATGGAGAAA ACACAACAGT TGCTAAAGAT ACTTCAGCAA CAGGAGACAT AACTTATAAA GTTAATGTTA AATTAGATGA ATATGCTAAA TCAACTGACA TAGATACAAA ACTTGGTGAT TATGTAAAAT CAGTAACAGG TGATGACTTT ATCAAAGTAG ACGCAACCAA AAAACAAAGC CCAGCTTTAT CTCTTGATAC AGATAAGCTT GCAAACGATA GCACATTTGT AACAAACATT GCAGGAAATA AGGTATTTAA AAATACATAT GTAACAAATG AAAATTTGGA AAAAGGCTAT ACAAAACTTG ATGGAACAAA TCTATTTAAA GATAATACTT TAAATGAATT AAATCCAAAT TTCAAAAAAG ACAATTGGAG AAAAGCTCTT GATATAAGTG ACGCTAATAT TCAAAAGCTA GCTCAAAAAT CTGTTGTAGT AGCAAATGGA GAAAACACAA CAGTTGCTAA AGATACTTCA GCAACAGGAG ACATAACTTA TAAAGTTAAT GTTAAATTAG ATGAATATGC TAAATCAACT GACATAGATA CAAAACTTGG TGATTATGTA AAATCAGTAA CAGGTGATGA CTTTATCAAA GTAGACGCAA CCAAAAAACA AAGCCCAGCT TTATCTCTTG ATACAGATAA GCTTGCAAAC GATAGCACAT TTGTAACAAA CATTGCAGGA AATAAGGTAT TTAAAAATAC ATATGTAACA AATGAAAATT TGGAAAAAGG CTATACAAAA CTTGATGGAA CAAATCTATT TAAAGATAAT ACTTTAAATG AATTAAATCC AAATTTCAAA AAAGACAATT GGAGAAAAGC TCTTGATATA AGTGACGCTA ATATTCAAAA GCTAGCTCAA AAATCTGTTG TAGTAGCAAA TGGAGAAAAC ACAACAGTTG CTAAAGATAC TTCAGCAACA GGAGACATAA CTTATAAAGT TAATGTTAAA TTAGATGAAT ATGCTAAATC AACTGACATA GATACAAAAC TTGGTGATTA TGTAAAATCA GTAACAGGTG ATGACTTTAT CAAAGTAGAC GCAACCAAAA AACAAAGCCC AGCTTTATCT CTTGATACAG ATAAGCTTGC AAACGATAGC ACATTTGTAA CAAACATTGC AGGAAATAAG GTATTTAAAA ATACATATGT AACAAATGAA AATTTGGAAA AAGGCTATAC AAAACTTGAT GGAACAAATC TATTTAAAGA TAATACTTTA AATGAATTAA ATCCAAATTT CAAAAAAGAC AATTGGAGAA AAGCTCTTGA TATAAGTGAC GCTAATATTC AAAAGCTAGC TCAAAAATCT GTTGTAGTAG CAAATGGAGA AAACACAACA GTTGCTAAAG ATACTTCAGC AACAGGAGAC ATAACTTATA AAGTTAATGT TAAATTAGAT GAATATGCTA AATCAACTGA CATAGATACA AAACTTGGTG ATTATGTAAA ATCAGTAACA GGTGATGACT TTATCAAAGT AGACGCAACC AAAAAACAAA GCCCAGCTTT ATCTCTTGAT ACAGATAAGC TTGCAAACGA TAGCACATTT GTAACAAACA TTGCAGGAAA TAAGGTATTT AAAAATACAT ATGTAACAAA TGAAAATTTG GAAAAAGGCT ATACAAAACT TGATGGAACA AATCTATTTA AAGATAATAC TTTAAATGAA TTAAATCCAA ATTTCAAAAA AGACAATTGG AGAAAAGCTC TTGATATAAG TGACGCTAAT ATTCAAAAGC TAGCTCAAAA ATCTGTTGTA GTAGCAAATG GAGAAAACAC AACAGTTGCT AAAGATACTT CAGCAACAGG AGACATAACT TATAAAGTTA ATGTTAAATT AGATGAATAT GCTAAATCAA CTGACATAGA TACAAAACTT GGTGATTATG TAAAATCAGT AACAGGTGAT GACTTTATCA AAGTAGACGC AACCAAAAAA CAAAGCCCAG CTTTATCTCT TGATACAGAT AAGCTTGCAA ACGATAGCAC ATTTGTAACA AACATTGCAG GAAATAAGGT ATTTAAAAAT ACATATGTAA CAAATGAAAA TTTGGAAAAA GGCTATACAA AACTTGATGG AACAAATCTA TTTAAAGATA ATACTTTAAA TGAATTAAAT CCAAATTTCA AAAAAGACAA TTGGAGAAAA GCTCTTGATA TAAGTGACGC TAATATTCAA AAGCTAGCTC AAAAATCTGT TGTAGTAGCA AATGGAGAAA ACACAACAGT TGCTAAAGAT ACTTCAGCAA CAGGAGACAT AACTTATAAA GTTAATGTTA AATTAGATGA ATATGCTAAA TCAACTGACA TAGATACAAA ACTTGGTGAT TATGTAAAAT CAGTAACAGG TGATGACTTT ATCAAAGTAG ACGCAACCAA AAAACAAAGC CCAGCTTTAT CTCTTGATAC AGATAAGCTT GCAAACGATA GCACATTTGT AACAAACATT GCAGGAAATA AGGTATTTAA AAATACATAT GTAACAAATG ATAAATTATC AGACTCAGGC TTTAAATTTA CAGGTGATGA TACTGCCAAA GAAATTGATA AAAAATTAGG TGGAACCATT TCTATCAAAG GTGGTGCGGA TTCTACAAAA CTTTCTGATA AAAATATCGG TGTAGTGGCA GTAAATGATA GTTTGCAAGT AAAACTTGCT AAGAATTTGC TTGGATTAGA AAGCGCCGAA TTCAAAAAAG GTGCAGACAC AACTACTGTT AGTGCTGAAA AAGGTATATC TACAACCAAA ACATTAAAAG TTACAGATGG TAGTGGAAAT ACGGTAGCAG AAATTGACAA AACCCAAATC ACAGATGCAA GCGGCAATAA AGTAACCAAT ATCAATAGCG CTATAAATAA TCTTTATGCT ACTACTAAAG GTTTGACAAG TGATAATGCA TTGGCTGTAA AATATGATTC ATCTACTAAA GAAAAAATTA TGCTTGGTGG AAGTGGTGCT ACAAAACAAG TTGCCATTAA AAATCTTGCT AGTGCGGGAG ATATTAATGA CGTTAACAAC AAATTCAATG CTGTAAATGC TGGTGATTTA AAAACTGCTT TAAGTGGAGT AAATAACTCT ATAGACAACA TAAATAACAG AAACTTTATA AGTTTAAGTG TATCTGCAAA TGGTGGCACA AAAGATGATA TAAAAGCAAA GGAAAATATT GATTTTACCG CTACAGACGG TATAACAGTA GCTTACAACG CAAGTGTGAA CAAATTTACA TTCAGTGCTG ATTTTGATTC AATTGCAAAT AATAATGTTT TATCAAACAA ATATGCAATG CTTGACGGAA GCAATTTGAT AGCCACTAAA GGCTTCAAAC AAGATGCTTG GCGAGGAGCT TTAGGTCTAA CAGATGCTAA CATAGCAAAT ATATTTGAGG AAGGAAAAGA TATCTCTATA ACAAAAAATA GCAATAATAA TAAATACACT ATCGCTTATA CAGGCACAGG CGGCGGTACA GGCACAGGTG GAATGTCTGA AGCTGAAGTT AAAGAAATTA TCAATAATTA TATCGGTGGC AATATTATAA ATCCTGCTAA ATTTAATGAG AAACTTATAA CTCACGATGT AAGCGAACGA AAAACAACAG AGAACAAAAG CATAATTGCC GCAATAAATA GAATAAATAA ATATGGAATC GGTTTTGTGC ATGTAAATGG TGGTGATATT ACTCCAGATC CAACAACCGG TAAATCAGCA AATGATTCGT CTGCAGAAGG TACAAATGCA ATTGCCATCG GTCCAAAATC ACAAGCAAAC AGAGATAATT CAATCGCTAT CGGACTAAAA TCACAAGCAA ACGGTGAAAA TTCGATTGCT ATCGGCGTAG GTAATGTTGT AACCGGTAAA AATTCAGGTG CATTCGGCGA TCCGACATAT ATAAATGGGG ATAATTCATA CGCAATCGGA AATAATAATA AAATTGATTC TGAAAATACA TTTGTATTAG GAAATGAAGT TAGAGTCGGT GCAGATATGC AAGGCGCTGT AGTATTGGGA AGTGGTTCAA CGGCGGTGGA CAAAGCTATA GAAGTATCAA GAGCTGAAGT AAATGGTATA ACTTATGATG GATTTAAAGG ACAAGCAGCC GGCGGAATGA TACTTTCTGT AGGTGCTAAG GGCGCCGAGC GACAAATCAA AAATGTTGCG GCAGGTAAAA TTTTAAAGGA CAGCACAGAT GCCGTAAACG GAAGCCAACT ATACGCTACA AATAAAATTA TAGGAAATGT AGCAAATAGT GTAAAAAATG TAATCGGCGG CAATGCTAAG GTAAATAACA ACGGTGAAAT TTCAGCTTCA GATATAGGCG GAACCGGTCA AAACAATATA AATAACGCTA TAGCTTATAT AAACAAGAGA AATAAAAGCG GAAATTCATA TATTGATATT GACGCACCTG AAGGAAGTGT ATTGCCAAGT GTAAGCAAAG GTTCAAATTC AATAGCAATC GGTGCAGGAT CAAGTGATGA CAAACGTAAA AATGTAGTAT CTGTCGGTAA TGCAACAAAA GGTCTAAATA GAACCATCAC AAATGTAGCA CCAGGTAAAT ACGGCACTGA TGCTGTAAAT ATGAATCAAC TTTACGGCGT TGCCGGTGGA TTGTCAAAAC AAATCAATGA CGTAAAAAAG AAATCGAGTG CAGGTATCGC AGGAGCTGTG GCTCTTGGTA TGCTACCGCA ATCAAATATT CCTGGAGATG CGCTTGTATC AATCGGTACA GGATATCATG ACAGTGAAAG TGCAGTCGCA CTTGGTATCA GCAAAACAAG TGACAACGCA AGATGGATTT TTAAAGGTGG CGTAAGCTAT GACAGTCAAG ATGAAGTAAC AGCCGGTGCA TCGGTAGGTT TTCACTTCTA A
|
Protein sequence | MLKILQQLGD ITYKVNVKLD EYAKSTDIDT KLGDYVKSVT GDDFIKVDAT KKQSPALSLD TDKLANDSTF VTNIAGNKVF KNTYVTNENL EKGYTKLDGT NLFKDNTLNE LNPNFKKDNW RKALDISDAN IQKLAQKSVV VANGENTTVA KDTSATGDIT YKVNVKLDEY AKSTDIDTKL GDYVKSVTGD DFIKVDATKK QSPALSLDTD KLANDSTFVT NIAGNKVFKN TYVTNENLEK GYTKLDGTNL FKDNTLNELN PNFKKDNWRK ALDISDANIQ KLAQKSVVVA NGENTTVAKD TSATGDITYK VNVKLDEYAK STDIDTKLGD YVKSVTGDDF IKVDATKKQS PALSLDTDKL ANDSTFVTNI AGNKVFKNTY VTNENLEKGY TKLDGTNLFK DNTLNELNPN FKKDNWRKAL DISDANIQKL AQKSVVVANG ENTTVAKDTS ATGDITYKVN VKLDEYAKST DIDTKLGDYV KSVTGDDFIK VDATKKQSPA LSLDTDKLAN DSTFVTNIAG NKVFKNTYVT NENLEKGYTK LDGTNLFKDN TLNELNPNFK KDNWRKALDI SDANIQKLAQ KSVVVANGEN TTVAKDTSAT GDITYKVNVK LDEYAKSTDI DTKLGDYVKS VTGDDFIKVD ATKKQSPALS LDTDKLANDS TFVTNIAGNK VFKNTYVTNE NLEKGYTKLD GTNLFKDNTL NELNPNFKKD NWRKALDISD ANIQKLAQKS VVVANGENTT VAKDTSATGD ITYKVNVKLD EYAKSTDIDT KLGDYVKSVT GDDFIKVDAT KKQSPALSLD TDKLANDSTF VTNIAGNKVF KNTYVTNENL EKGYTKLDGT NLFKDNTLNE LNPNFKKDNW RKALDISDAN IQKLAQKSVV VANGENTTVA KDTSATGDIT YKVNVKLDEY AKSTDIDTKL GDYVKSVTGD DFIKVDATKK QSPALSLDTD KLANDSTFVT NIAGNKVFKN TYVTNENLEK GYTKLDGTNL FKDNTLNELN PNFKKDNWRK ALDISDANIQ KLAQKSVVVA NGENTTVAKD TSATGDITYK VNVKLDEYAK STDIDTKLGD YVKSVTGDDF IKVDATKKQS PALSLDTDKL ANDSTFVTNI AGNKVFKNTY VTNDKLSDSG FKFTGDDTAK EIDKKLGGTI SIKGGADSTK LSDKNIGVVA VNDSLQVKLA KNLLGLESAE FKKGADTTTV SAEKGISTTK TLKVTDGSGN TVAEIDKTQI TDASGNKVTN INSAINNLYA TTKGLTSDNA LAVKYDSSTK EKIMLGGSGA TKQVAIKNLA SAGDINDVNN KFNAVNAGDL KTALSGVNNS IDNINNRNFI SLSVSANGGT KDDIKAKENI DFTATDGITV AYNASVNKFT FSADFDSIAN NNVLSNKYAM LDGSNLIATK GFKQDAWRGA LGLTDANIAN IFEEGKDISI TKNSNNNKYT IAYTGTGGGT GTGGMSEAEV KEIINNYIGG NIINPAKFNE KLITHDVSER KTTENKSIIA AINRINKYGI GFVHVNGGDI TPDPTTGKSA NDSSAEGTNA IAIGPKSQAN RDNSIAIGLK SQANGENSIA IGVGNVVTGK NSGAFGDPTY INGDNSYAIG NNNKIDSENT FVLGNEVRVG ADMQGAVVLG SGSTAVDKAI EVSRAEVNGI TYDGFKGQAA GGMILSVGAK GAERQIKNVA AGKILKDSTD AVNGSQLYAT NKIIGNVANS VKNVIGGNAK VNNNGEISAS DIGGTGQNNI NNAIAYINKR NKSGNSYIDI DAPEGSVLPS VSKGSNSIAI GAGSSDDKRK NVVSVGNATK GLNRTITNVA PGKYGTDAVN MNQLYGVAGG LSKQINDVKK KSSAGIAGAV ALGMLPQSNI PGDALVSIGT GYHDSESAVA LGISKTSDNA RWIFKGGVSY DSQDEVTAGA SVGFHF
|
| |