Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CHAB381_1056 |
Symbol | |
ID | 5408901 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Campylobacter hominis ATCC BAA-381 |
Kingdom | Bacteria |
Replicon accession | NC_009714 |
Strand | - |
Start bp | 992807 |
End bp | 994432 |
Gene Length | 1626 bp |
Protein Length | 541 aa |
Translation table | 11 |
GC content | 32% |
IMG OID | 640870741 |
Product | type II and III secretion system protein |
Protein accession | YP_001406614 |
Protein GI | 154147986 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1450] Type II secretory pathway, component PulD |
TIGRFAM ID | [TIGR02519] pilus (MSHA type) biogenesis protein MshL |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.0036675 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCATTAT TACATATAAG TAAAAAAATT GGCATAGCTA CATTATTGGC TGTTAGCGTT GCTACAAGCT TAAATGCTGC TAGTTCTAGT TGCGACAAAA GAGCTTTTAA TATAAAAGTA AATGATGTCG TCACGCTAAA TGAAATGCTT ACACAACTTT CCGATGTGTG TAAATTTTCA GTTGTGGCAA AAGATGCTGT TGCTGCAGAG GAATTAAAAA AAGAACTTCA AGGTGTAGGT ATAAAAGACC TTTCATTGAG AGAAATTTTT GATTTATTAA TTAGCGAGAA TAATCTTAGT TATGATTTTT CGAACAATGT TTTGAAAATT TCCGCTTTGC AAACTAAAAC CTTTAAAGTT GATTATATTA CGTCTGTTAG AGAAGCCACA GCGGTAACTA AAGCTTCTGT TGATTCAGAT CCTATAGAAA TGGGCAATGA AGGTAATAGC GAATCTAAAC AGGACAATCT TATTTCAGCA AAAGAGAAAT TTGATTTTTG GGAAAAAATT AGCGATGAAG TTACCTCTAT CTTAAATAAC GGTACAGAAA AATATGTCGC TATCGCGCCT ATCATAAATC AAAATGCAGG TTTGGTAACT GTAACCGGTA TGAAATCTCA AATCGCAAGA GTTGATGCAT ATATAAATAA AATGAAAAAA CGTCTTGAAA GACAAGTAAG TCTTGATGTT TCTATTGTAG CAGTCGAACT TAGCAATAGT TACACAACCG GAATTGATTG GAGTAAATTT CAATTAGGCT TTAATACATA TCTTAATGGA GATCCGTCAA CTCCTACTTC ATATAGTTTT GGAAATAGAA ATAAAGTTGG TCAAGTTACA TCTTTGCCTC AAATTGAAGA CATTAAGGAT AAAGATGGAA AGATTCTTTT TAGTAGACCA ACATCGCTTG GAACATGGGA TTATAAAGAA AAAAGTATGG GTAGTGTAAA AGCCAGCGAT AGCAATGGTG TGTGGGCAAT TGGAGCAAAT CTTAACTTTA ATATAGACGG AATGATAAAT TTTCTTGAAA CAAAAGGCAA AACTAAAATT ATTTCAAGTC CAAAAGTTAC AACTATGAAT AATCAACCGG CTATTATTTC AGTTGGTGAT GTTATAAATT ATCGTATTCA AGAAAATACT ACAAGTGGCG GTCAAACAGA TGCTGGAACT ACTTCTGTAA CATATACCAA TTATTCTACA TTTATAGGAA TTTTATTAAA TATATTGCCT GAAATTTCGG ATGATAATAG AATTATGCTA AGAGTAAATC CATCTTTGAG CGATTTTAAA TATCAAGCCG ATAGAGAAGC TACAGCTCAA CTTGATAGAG TTATGGCGCC TGATACAATT CAAAAGAAAA TTTCAAGTGT TGTATGGGTA GATGATGGTG ATACTGTTAT ACTTGGCGGT TTGATCGGTC AAAATAAAGG AAAAGATAAT AAAAATGTTC CATTCTTAAG CGATATACCT TTGATAGGTA ATCTTTTCAA AAGTACTGCC GATAGACTTA CTACAACTGA ATTGGTGTTT GTTATTACTC CTCGTATCAT AGATAACACT GATACAAAAG TCAGTGATTC TTTGAAAGAG CTTGGTTTTT CTAAATCTTT ATATACAAAT GAGTAA
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Protein sequence | MSLLHISKKI GIATLLAVSV ATSLNAASSS CDKRAFNIKV NDVVTLNEML TQLSDVCKFS VVAKDAVAAE ELKKELQGVG IKDLSLREIF DLLISENNLS YDFSNNVLKI SALQTKTFKV DYITSVREAT AVTKASVDSD PIEMGNEGNS ESKQDNLISA KEKFDFWEKI SDEVTSILNN GTEKYVAIAP IINQNAGLVT VTGMKSQIAR VDAYINKMKK RLERQVSLDV SIVAVELSNS YTTGIDWSKF QLGFNTYLNG DPSTPTSYSF GNRNKVGQVT SLPQIEDIKD KDGKILFSRP TSLGTWDYKE KSMGSVKASD SNGVWAIGAN LNFNIDGMIN FLETKGKTKI ISSPKVTTMN NQPAIISVGD VINYRIQENT TSGGQTDAGT TSVTYTNYST FIGILLNILP EISDDNRIML RVNPSLSDFK YQADREATAQ LDRVMAPDTI QKKISSVVWV DDGDTVILGG LIGQNKGKDN KNVPFLSDIP LIGNLFKSTA DRLTTTELVF VITPRIIDNT DTKVSDSLKE LGFSKSLYTN E
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