Gene CHAB381_0926 details

Gene Information

• Locus tag: CHAB381_0926
• Symbol: speA
• ID: 5408729
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Campylobacter hominis ATCC BAA-381
• Kingdom: Bacteria
• Replicon accession: NC_009714
• Strand: +
• Start bp: 861045
• End bp: 862886
• Gene Length: 1842 bp
• Protein Length: 613 aa
• Translation table: 11
• GC content: 36%
• IMG OID: 640870613
• Product: arginine decarboxylase
• Protein accession: YP_001406487
• Protein GI: 154148932
• COG category: [E] Amino acid transport and metabolism
• COG ID: [COG1166] Arginine decarboxylase (spermidine biosynthesis)
• TIGRFAM ID: [TIGR01273] arginine decarboxylase, biosynthetic

Plasmid Coverage information

• Num covering plasmid clones: 13
• Plasmid unclonability p-value: 0.355796
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAACGATT ACGGTTTGCC GATTTGGGGA AACTCAAATT TTACGATAGA TAGCGAAGGA 
AGAGTTTGTT TAAATACGGA CTTTAAGCCT GCTTTAATAG ATATGGTAAA CGAGATTCGA 
GATGATGGCA TAAGAGGTCC GATACTTTTA CGTTTTCCAC ACCTTATAAA AAAGCAAATA 
GTGGAAATTT ATTCAAATTT TGCAAGAGCG CGCAAGGAAT TTGAATATAA AGGCGAATTT 
CATGCCGTTT ATCCGTTAAA AGTAAATCAA TATCCAGGTT TTGTAAAAAA TTTAGTTAAG 
CTCGGTAAGC ATTACAAATA CGGTCTTGAA GCCGGAAGTA AAGCCGAACT TTTGCTTGCT 
ATGACTTATA ATAATTTTGA TGCGCCGATA ACGGTTAACG GTTTTAAAGA TAAAGAACTT 
ATAAATATAG GTTTTATTGC TGCTGAAATG GGACATAATA TCACAATTAC AATTGAAGGA 
TTAAGTGAAC TTAAAGCAAT AATCGAAACA GCAAAAGAGC GTTTCGCACC AAAACCTTTT 
ATAGGACTTA GAATAAGACT TCACAACTCA GGCACCGGTA TTTGGGCGAA AAGTGGCGGC 
ATCAACTCAA AATTCGGACT TACTTCAACG GAGCTGATTG AGGCAATCAG TATGCTGAAA 
GAGGCTAATT TGATAGACAG ATTTACGATG ATACATTTTC ATATCGGTTC TCAAATAAGT 
GAAATTCATC CACTTAAAAA AGCCTTAACA GAAGCCGGAA ATATCTATGC CGAACTTCGC 
AAAATGGGTG CTTGCAATTT AAAATCTATA AATTTGGGCG GCGGTCTGGC TATAGAATAT 
TCGCAGACTA AAGAAAATGC GAATCGCAAC TATACGCTTC GCGAATATGC AAATGACGTA 
GTGTTTTTGC TAAAAACAAT CGCAAATCAC AAAAAAGTCG ATGAGCCGGA CATTTTTGTA 
GAATCAGGAA GATTTGTTTC GGCAAGCCAT GCTGTGTTGA TAGCTCCTGT GCTTGAGCTT 
TTCAGTCAAG AATATACTGA AAAAAAACTG GCTTTAAAAG ATCAAAATCC GCCTGTTATT 
GCGGAACTTT TTGATTTATA TAAGGATATG AAGCCTGCAA ATGCACTTGA ATATCTTCAC 
GACGCTATTT CTCATCTTGA TAGTGTGCTA ACTTTGTTTG ATCTTGGATA TGTGGATTTG 
ATAGATCGCT CAAATGGCGA AATTTTAGTT CATTTGATTA TGAAAAAATC TATTTCAATG 
CTTGGAAACA AGCAAAATTA TGCGGATTTA CTAAAAATTC AAGACGAAGT TCAAGAGAGA 
TATCTGGTAA ATTTTTCAAT CTTTCAATCC TTGCCTGATT TTTGGGGTAT AAAACAACAT 
TTTCCTATAA TGCCGCTTGA AAAACTCGAC GAGCGCCCTA CTTTGTCGGC ATCAATCTGG 
GATATTACTT GTGACAGCGA CGGCGAAATA AGTTTTGATA GTATTAAAAA TCCGTTGTTT 
TTACACGATA TAGATCCGGA AAAAGAAAAT TATTTCATTG GATTTTTTTT AGTCGGCGCT 
TATCAGGAAG TGCTTGGAAT GAGTCATAAT CTTTTTGCAC ACCCGACTGA GGCTACAATT 
CGTTTGAAAG ATGACGGTGG ATATGAAATT TGTGATCTTT TGGAGTCACA ATCCGTCAGC 
GATATTTTAG AGGATATGGA TTACGATGTA TCGCTCATTC GCGATACTTT AAACGAGCGA 
ATTGAAAAAT CATCACTCAT AAACGAAAAA GAAAAAAAAC AAATTTTAGG TGAGTTATAT 
CTATTTTTAA ATGATAACGG CTACCTAAAA ACTATAGGAT AA 

 

Protein sequence

MNDYGLPIWG NSNFTIDSEG RVCLNTDFKP ALIDMVNEIR DDGIRGPILL RFPHLIKKQI 
VEIYSNFARA RKEFEYKGEF HAVYPLKVNQ YPGFVKNLVK LGKHYKYGLE AGSKAELLLA 
MTYNNFDAPI TVNGFKDKEL INIGFIAAEM GHNITITIEG LSELKAIIET AKERFAPKPF 
IGLRIRLHNS GTGIWAKSGG INSKFGLTST ELIEAISMLK EANLIDRFTM IHFHIGSQIS 
EIHPLKKALT EAGNIYAELR KMGACNLKSI NLGGGLAIEY SQTKENANRN YTLREYANDV 
VFLLKTIANH KKVDEPDIFV ESGRFVSASH AVLIAPVLEL FSQEYTEKKL ALKDQNPPVI 
AELFDLYKDM KPANALEYLH DAISHLDSVL TLFDLGYVDL IDRSNGEILV HLIMKKSISM 
LGNKQNYADL LKIQDEVQER YLVNFSIFQS LPDFWGIKQH FPIMPLEKLD ERPTLSASIW 
DITCDSDGEI SFDSIKNPLF LHDIDPEKEN YFIGFFLVGA YQEVLGMSHN LFAHPTEATI 
RLKDDGGYEI CDLLESQSVS DILEDMDYDV SLIRDTLNER IEKSSLINEK EKKQILGELY 
LFLNDNGYLK TIG