| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHAB381_0469 |
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| Symbol | mfd |
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| ID | 5409420 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Campylobacter hominis ATCC BAA-381 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009714 |
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| Strand | - |
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| Start bp | 425908 |
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| End bp | 428868 |
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| Gene Length | 2961 bp |
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| Protein Length | 986 aa |
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| Translation table | 11 |
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| GC content | 34% |
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| IMG OID | 640870174 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_001406057 |
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| Protein GI | 154147968 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATACAGT CAAAAATTTA CGAATATTTT TCTAAAAACT CAAAAGAAAT TTTAATTACG
GAAAACGATA AAGAGGCTCA AATTTCAGAT CAAGTGCTGA AATTTATAGG TTTTGAAACA
TTTGTCTTAC CTGATTTCAG GGCATTACAC GGTGAAGATT TAAGAAGTTA TTATGACGAA
TTGATTTCAA TAAGCACCGT ACTTTCGGCA TTTTATAAAT GTAAAAATAA AAAAATCATT
ATTTCACCGA TTAGAACTAT TTTAAATAAA CTTCCGGCAA AATCACAACT TAAATTTTTA
AATCTAAAAT TTGCGGACAA ACTTGAAATT TCAAACTTTA AAGATGAAAT TTTAAGAATC
GGGTATTTGA CAAACGATAT CGTTCAAAGT AAAGGCGAAG TCAGTTTTCG CGGTGAAATT
ATTGATATTT TCGCGCTGAA TTATGAAAAA CCGATTAGAA TTTTATTAAA TGACGATGAA
ATCGAAAGTA TAAGATTTTT TGACGAAAGC ACGCAAAAAA GTGAACCGAC AGAAATAGAA
TCAATAGAAA TAGCGCCGTT TTTAGCAAAT TTAAGCAAAG ATGAGTTTGA AAACACAAAT
GAAAAAATCG CAAATTTCGA TTCGGACGCG CTTATAAAAG ATCTTTCCAG TCTCGGCTTT
TGGTTTATTG ACGGATTTAT TGACTATTTG CAAAATTTCA GCTTCATCTG TTTAAACAAA
CTCGACACAA ACGAAATTTT TAGCGAGCGA AATTTGGATT TTTTAAATCA GGCTGAAATT
TTACCTGAAC CGAAAAAGTT CAAAGATTTG GTTATAACAC CAAGTGCGGA GTTTTTTGAA
TTTCATAAAG ACGCACAAAT CACGCTTATA GCGCGAAATT CCGCTCTTAT AGACGAATTG
AACATTTCAA TTTCGCCAAA TATCAAAATT TTACGTGAAG ACTTAGTCGT AAATCTTATC
TCAAATGACG AAATAATTAT ATCTCTTAAT AAATTTAAAG CAAAAAAAAG AGTCAGAAAA
AGCTCACTTG CTGTTGATGA GCTTCAAATA GGCGATTTCG TAGTACATGA AAACTACGGC
GTTGCGAAAT TTGCAGGTCT TGAACTTATA GAAGTTCTTG GCTCAAAAAG TGAATTTGTG
GTTTTGGAAT ATTTCGGCGG CGATAAATTA CTGCTTCCTG TGCAAAATTT GAACTTAATC
GATCGCTACA TCGCAAGCGG CGTGGCTACG CTTGACAAAC TCGGTAAAAC CGGTTTTGCA
AAGATCAAAG AAAAAGTGCG TGAAAAACTT TTTGCAATCG CTTCAAAAAT CATTCAAACA
GCAGCAGCCA GAGAACTTGT GCGCGGTATA GTAATAGAAA ATAATACACC TGAATACGCA
AAATTTTTAA GCAGCGCAGG ATTTGAATAC ACAAAAGATC AACAAAATGC AGTAAATGCG
ATATTTACAG ATCTGAAAAG CGGCAAAGTT ATGGATAGAC TGATTAGCGG CGATGTAGGT
TTCGGAAAAA CGGAAGTTGC GATGAATGCA ATTTTTGCAT GTATCAAAAG CGGCTATTCC
GCGCTGTTTT TCGTGCCTAC GACACTTCTT AGCGCTCAAC ACTACGCCAC ATTAAAAGAA
AGACTTACTC CTTTTAAAAT TCAGGTTTTT CGCCTTGACA GATTTACAGG CGCCAAAGAA
AAAGCTGAAA TTTCAAAAAA AATAAAAGAC AAAATTCCTA TCGTAATCAT AGGAACTCAC
GCGCTTTTAA ACATGGAAGT CGCAAATCTT GGGCTTATTA TAATTGACGA AGAGCATAAA
TTCGGTGTAA AACAAAAAGA AAAACTCAAA TCAAAATCCG CCGCTTCACA CGTTTTAAGT
ATGAGTGCTA CTCCAATTCC GCGCTCGCTC AATATGGCTT TAAGCTCTTT AAAAAGCTAC
AGCGTTCTTT CGACGCCGCC GCTTGATAGA CTTGATGTAA GAACATTCGT AAAAGAGCGG
GATGAAAAAA TCATTAAAGA AGCGATTATG CGTGAAATTC GCCGTGGCGG ACAAGTATTT
TTCGTGCATA ATCATATCGC TACAATTGAA ACTTGCAGAA AAAATTTACA AAAAATCGTA
CCGAATCTTA AAATTTTGAT ACTTCACTCA CAAATTGACG CAAAAACTAC AGAAAATGAA
ATTTTGAAAT TTGAAGCAGG TGAATATGAA ATTTTACTAT GCACAAGTAT CGTAGAAAGC
GGAATTCATA TGCCAAACGT AAATACAATT ATTGTAGAAA ATGCAAATAA ATTCGGCATT
GCAGATCTTC ACCAACTGCG CGGACGTGTT GGTAGAAGCG CAAAACAAGG GTTTTGCTAT
TTTATGGTAG AAGATAAAAC AGCACTTAAT GAAGATGCCA TAAAGCGTCT TATAGCGCTT
GAAAGCAATT CGTTTTTAGG TTCCGGTTCA GTGCTTGCTT ATCACGATCT TGAAATAAGA
GGCGGTGGAA ATTTAATCGG CGAAGCACAA AGCGGGCATA TAGAGGCAAT CGGATATTCA
CTTTATATTA AAATGCTTGA AGATGAAATA AATAAACTGA TGAATAAAAA AACGCAAAAT
AAGGATGTAG AGCTAAAAAT TGCCGTAAAT GCTTTCTTAA ACAGCGATTT TATACGAGAG
GATCGATTGA GACTCGATCT TTACAGAAGA CTCAGCAAAG CCGAAACCGT TTCACAGGTT
TATGAAATTT TCGGCGAAAT TGAAGATAGA TTCGGTAAAG CCGATATTTA CACAAAACAA
TTTATTGATT TGATGATTAT TAAAATTTTG GCAAACAGTC TTAATATCAA ATCAATTACT
TCTGCAGAAC AAAATATATT AATAACATAT GCAAACGGCG AAAAAATGCG TTTAAAATCA
AGCAGCAAGG ACGATGATGA CGTTTTAGCC GAAATTTTGA TATATTTACG AAAGGAAAAT
AAAAAACATG GACTGGAGTA A
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| Protein sequence | MIQSKIYEYF SKNSKEILIT ENDKEAQISD QVLKFIGFET FVLPDFRALH GEDLRSYYDE
LISISTVLSA FYKCKNKKII ISPIRTILNK LPAKSQLKFL NLKFADKLEI SNFKDEILRI
GYLTNDIVQS KGEVSFRGEI IDIFALNYEK PIRILLNDDE IESIRFFDES TQKSEPTEIE
SIEIAPFLAN LSKDEFENTN EKIANFDSDA LIKDLSSLGF WFIDGFIDYL QNFSFICLNK
LDTNEIFSER NLDFLNQAEI LPEPKKFKDL VITPSAEFFE FHKDAQITLI ARNSALIDEL
NISISPNIKI LREDLVVNLI SNDEIIISLN KFKAKKRVRK SSLAVDELQI GDFVVHENYG
VAKFAGLELI EVLGSKSEFV VLEYFGGDKL LLPVQNLNLI DRYIASGVAT LDKLGKTGFA
KIKEKVREKL FAIASKIIQT AAARELVRGI VIENNTPEYA KFLSSAGFEY TKDQQNAVNA
IFTDLKSGKV MDRLISGDVG FGKTEVAMNA IFACIKSGYS ALFFVPTTLL SAQHYATLKE
RLTPFKIQVF RLDRFTGAKE KAEISKKIKD KIPIVIIGTH ALLNMEVANL GLIIIDEEHK
FGVKQKEKLK SKSAASHVLS MSATPIPRSL NMALSSLKSY SVLSTPPLDR LDVRTFVKER
DEKIIKEAIM REIRRGGQVF FVHNHIATIE TCRKNLQKIV PNLKILILHS QIDAKTTENE
ILKFEAGEYE ILLCTSIVES GIHMPNVNTI IVENANKFGI ADLHQLRGRV GRSAKQGFCY
FMVEDKTALN EDAIKRLIAL ESNSFLGSGS VLAYHDLEIR GGGNLIGEAQ SGHIEAIGYS
LYIKMLEDEI NKLMNKKTQN KDVELKIAVN AFLNSDFIRE DRLRLDLYRR LSKAETVSQV
YEIFGEIEDR FGKADIYTKQ FIDLMIIKIL ANSLNIKSIT SAEQNILITY ANGEKMRLKS
SSKDDDDVLA EILIYLRKEN KKHGLE
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