Gene CHAB381_0224 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCHAB381_0224 
Symbol 
ID5408212 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCampylobacter hominis ATCC BAA-381 
KingdomBacteria 
Replicon accessionNC_009714 
Strand
Start bp199443 
End bp201377 
Gene Length1935 bp 
Protein Length644 aa 
Translation table11 
GC content33% 
IMG OID640869937 
Producthigh-affinity choline transport protein 
Protein accessionYP_001405831 
Protein GI154148903 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1292] Choline-glycine betaine transporter 
TIGRFAM ID[TIGR00842] choline/carnitine/betaine transport 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAATTTA AAAAATCTTA CAATCCAAAT GTTTTTTACA GCTCAGTTTC AGTTTTAGTT 
TTTATTCTAT TTTTTGTATT ATTTTTACCG GATTTCTCAC TTAAATATCT TAAAATGACG
CAGGAATTTT TGACTGCAAA ATTCGGTTGG TTTTATGTTC TTAGTATGAC GATTATATTT
TTTTCGGTTT TATATTTGGC TTTTTCAAGG TTTGGAAATA TTAAATTAGG ACCAGATCAT
TCCGTGCCTG AGTATAGCAA TATTTCATGG TTTGCCATGC TTTTTGCTGC AGGAATGGGA
ATAGGTCTTA TGTTTTTCGG TGTCAGTGAA CCTCTTATGC ATTTTTTAAG TCCGCCAAGC
GGCACAAGCG ATCAGGCCGT TGCTGCAAAA GAGGCGATGA ATATTACATT TTTTCATTGG
GGATTTAGCG CGTGGGCGTG CTATGGAATA GTTGCCGTAA TTTTAGCATT TTTTTCATAT
AGACATAATT TACCACTTAC TTTAAGATCC GCTTTTTATC CTTTAGTAGG AGATAAAATT
TACTCGAAAT TTGGTGATAT TATAGATGTT TTTGCTGTTT TAGCGACGCT TTTTGGAGTT
ATTACATCTC TTGGATACGG CGTGCTTCAA ATAGGCGGAG GTTTTGAATA TATTTTTGGA
ATAGAATCAA ATAAAACTAC GCAAATAATT CTTATTTTTG CGATTATGAT TTGTGTGACA
ATTTCAGCAG TAAGCGGTGT AAATAAAGGT ATAAAAATTT TAAGCAGTAT AAATATAATC
TTAGCTTTTT TATTGATTAT TTTTATATTT TTACTTGGAA ATACAACAGG GCTCTTAAAA
GCTTTGCTTG AAAATGTTGG AAATTATTTG ACATCATTTG TAGGCGACAC TTTCAATATG
TATGCTTACA AAAAGCAAAA TGATAATTGG CTTGGCGGTT GGACAATACT TTATTGGACC
TGGTGGCTGT CTTGGTCGCC TTTTGTAGGT GTTTTTATAG CTAAAATTTC ACGCGGCAGG
ACAATTAGAG AATTTGTTAT AGGCGTTTTG TTGGTTCCGT CAGGATTTAC GTTTTTATGG
ATGAGCGGTT TCGGAAATAG CGCAATAGAT TTTGTAAATT CCGGTTTTAT AACTTTAGCA
GATATGGTAA ATAAAGATGT TTCATTGGCG CTTTTCATAT TTTTGGAAAA ATTTCCGCTT
AGCGGAATTT TATCTTTGAT ATCAGTTTTA ATGATAATTT TATTTTTTAT TACATCCGCT
GATAGTGCTG CTATGGTTAT AAATATGATT TGTTCCAACG GTAATGATAA AACTCCCGTT
TGGCAAAAAC TTTTTTGGTG TATAATTATT GCTATTGTAG CTGCCGTTTT ATTATATATG
GGCGGATTTG ACGTGCTTCA AACAATGACT ATAATTTCAG CTTTTCCACT TACTTTGGCA
CTTCTTGGCT CTATGCACGG ACTTTTTAAA GCGCTAAATG TTGATGCGCA GAAAAAGTTT
ACTCAAAGTG TTGCAAATTT ACCTGTAATC GCAAGTAATA AATCTTGGCA GGAAAGACTT
CAAGTTATAA TTGATACTCC AAATAAATAT GAAGCGAAAG ATTTTTTAAA AGATATAGTA
GAGCCTGCTT TTAATGAAGT TTCCCAAATT TTTAAGAAAA ATGCGTTTAA TTATAAAATA
ACAAAATCGT TAAACGACAC AAAGATTGAA CTCGAAATAG ATTTGGCTGA CGAAAGAAAT
TTCGTGTATG GCGTGAGATT GATTGAGACA AACTCGCCAA GCTATATAAT GAGTGATAGT
TATTATAGAG CGGACGTCTT CTTAAAAGAG GGCGGACAAG ATTACGATAT AATCGGTTGG
AGTAAAATTT CAGTTATAAA TGACATAATA GAGCAATATA GAAAACATAT GCATTTTTTA
TACAAGACAA GATAA
 
Protein sequence
MKFKKSYNPN VFYSSVSVLV FILFFVLFLP DFSLKYLKMT QEFLTAKFGW FYVLSMTIIF 
FSVLYLAFSR FGNIKLGPDH SVPEYSNISW FAMLFAAGMG IGLMFFGVSE PLMHFLSPPS
GTSDQAVAAK EAMNITFFHW GFSAWACYGI VAVILAFFSY RHNLPLTLRS AFYPLVGDKI
YSKFGDIIDV FAVLATLFGV ITSLGYGVLQ IGGGFEYIFG IESNKTTQII LIFAIMICVT
ISAVSGVNKG IKILSSINII LAFLLIIFIF LLGNTTGLLK ALLENVGNYL TSFVGDTFNM
YAYKKQNDNW LGGWTILYWT WWLSWSPFVG VFIAKISRGR TIREFVIGVL LVPSGFTFLW
MSGFGNSAID FVNSGFITLA DMVNKDVSLA LFIFLEKFPL SGILSLISVL MIILFFITSA
DSAAMVINMI CSNGNDKTPV WQKLFWCIII AIVAAVLLYM GGFDVLQTMT IISAFPLTLA
LLGSMHGLFK ALNVDAQKKF TQSVANLPVI ASNKSWQERL QVIIDTPNKY EAKDFLKDIV
EPAFNEVSQI FKKNAFNYKI TKSLNDTKIE LEIDLADERN FVYGVRLIET NSPSYIMSDS
YYRADVFLKE GGQDYDIIGW SKISVINDII EQYRKHMHFL YKTR