Gene CHAB381_0224 details

Gene Information

• Locus tag: CHAB381_0224
• ID: 5408212
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Campylobacter hominis ATCC BAA-381
• Kingdom: Bacteria
• Replicon accession: NC_009714
• Strand: +
• Start bp: 199443
• End bp: 201377
• Gene Length: 1935 bp
• Protein Length: 644 aa
• Translation table: 11
• GC content: 33%
• IMG OID: 640869937
• Product: high-affinity choline transport protein
• Protein accession: YP_001405831
• Protein GI: 154148903
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG1292] Choline-glycine betaine transporter
• TIGRFAM ID: [TIGR00842] choline/carnitine/betaine transport

Plasmid Coverage information

• Num covering plasmid clones: 22
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAATTTA AAAAATCTTA CAATCCAAAT GTTTTTTACA GCTCAGTTTC AGTTTTAGTT 
TTTATTCTAT TTTTTGTATT ATTTTTACCG GATTTCTCAC TTAAATATCT TAAAATGACG 
CAGGAATTTT TGACTGCAAA ATTCGGTTGG TTTTATGTTC TTAGTATGAC GATTATATTT 
TTTTCGGTTT TATATTTGGC TTTTTCAAGG TTTGGAAATA TTAAATTAGG ACCAGATCAT 
TCCGTGCCTG AGTATAGCAA TATTTCATGG TTTGCCATGC TTTTTGCTGC AGGAATGGGA 
ATAGGTCTTA TGTTTTTCGG TGTCAGTGAA CCTCTTATGC ATTTTTTAAG TCCGCCAAGC 
GGCACAAGCG ATCAGGCCGT TGCTGCAAAA GAGGCGATGA ATATTACATT TTTTCATTGG 
GGATTTAGCG CGTGGGCGTG CTATGGAATA GTTGCCGTAA TTTTAGCATT TTTTTCATAT 
AGACATAATT TACCACTTAC TTTAAGATCC GCTTTTTATC CTTTAGTAGG AGATAAAATT 
TACTCGAAAT TTGGTGATAT TATAGATGTT TTTGCTGTTT TAGCGACGCT TTTTGGAGTT 
ATTACATCTC TTGGATACGG CGTGCTTCAA ATAGGCGGAG GTTTTGAATA TATTTTTGGA 
ATAGAATCAA ATAAAACTAC GCAAATAATT CTTATTTTTG CGATTATGAT TTGTGTGACA 
ATTTCAGCAG TAAGCGGTGT AAATAAAGGT ATAAAAATTT TAAGCAGTAT AAATATAATC 
TTAGCTTTTT TATTGATTAT TTTTATATTT TTACTTGGAA ATACAACAGG GCTCTTAAAA 
GCTTTGCTTG AAAATGTTGG AAATTATTTG ACATCATTTG TAGGCGACAC TTTCAATATG 
TATGCTTACA AAAAGCAAAA TGATAATTGG CTTGGCGGTT GGACAATACT TTATTGGACC 
TGGTGGCTGT CTTGGTCGCC TTTTGTAGGT GTTTTTATAG CTAAAATTTC ACGCGGCAGG 
ACAATTAGAG AATTTGTTAT AGGCGTTTTG TTGGTTCCGT CAGGATTTAC GTTTTTATGG 
ATGAGCGGTT TCGGAAATAG CGCAATAGAT TTTGTAAATT CCGGTTTTAT AACTTTAGCA 
GATATGGTAA ATAAAGATGT TTCATTGGCG CTTTTCATAT TTTTGGAAAA ATTTCCGCTT 
AGCGGAATTT TATCTTTGAT ATCAGTTTTA ATGATAATTT TATTTTTTAT TACATCCGCT 
GATAGTGCTG CTATGGTTAT AAATATGATT TGTTCCAACG GTAATGATAA AACTCCCGTT 
TGGCAAAAAC TTTTTTGGTG TATAATTATT GCTATTGTAG CTGCCGTTTT ATTATATATG 
GGCGGATTTG ACGTGCTTCA AACAATGACT ATAATTTCAG CTTTTCCACT TACTTTGGCA 
CTTCTTGGCT CTATGCACGG ACTTTTTAAA GCGCTAAATG TTGATGCGCA GAAAAAGTTT 
ACTCAAAGTG TTGCAAATTT ACCTGTAATC GCAAGTAATA AATCTTGGCA GGAAAGACTT 
CAAGTTATAA TTGATACTCC AAATAAATAT GAAGCGAAAG ATTTTTTAAA AGATATAGTA 
GAGCCTGCTT TTAATGAAGT TTCCCAAATT TTTAAGAAAA ATGCGTTTAA TTATAAAATA 
ACAAAATCGT TAAACGACAC AAAGATTGAA CTCGAAATAG ATTTGGCTGA CGAAAGAAAT 
TTCGTGTATG GCGTGAGATT GATTGAGACA AACTCGCCAA GCTATATAAT GAGTGATAGT 
TATTATAGAG CGGACGTCTT CTTAAAAGAG GGCGGACAAG ATTACGATAT AATCGGTTGG 
AGTAAAATTT CAGTTATAAA TGACATAATA GAGCAATATA GAAAACATAT GCATTTTTTA 
TACAAGACAA GATAA 

 

Protein sequence

MKFKKSYNPN VFYSSVSVLV FILFFVLFLP DFSLKYLKMT QEFLTAKFGW FYVLSMTIIF 
FSVLYLAFSR FGNIKLGPDH SVPEYSNISW FAMLFAAGMG IGLMFFGVSE PLMHFLSPPS 
GTSDQAVAAK EAMNITFFHW GFSAWACYGI VAVILAFFSY RHNLPLTLRS AFYPLVGDKI 
YSKFGDIIDV FAVLATLFGV ITSLGYGVLQ IGGGFEYIFG IESNKTTQII LIFAIMICVT 
ISAVSGVNKG IKILSSINII LAFLLIIFIF LLGNTTGLLK ALLENVGNYL TSFVGDTFNM 
YAYKKQNDNW LGGWTILYWT WWLSWSPFVG VFIAKISRGR TIREFVIGVL LVPSGFTFLW 
MSGFGNSAID FVNSGFITLA DMVNKDVSLA LFIFLEKFPL SGILSLISVL MIILFFITSA 
DSAAMVINMI CSNGNDKTPV WQKLFWCIII AIVAAVLLYM GGFDVLQTMT IISAFPLTLA 
LLGSMHGLFK ALNVDAQKKF TQSVANLPVI ASNKSWQERL QVIIDTPNKY EAKDFLKDIV 
EPAFNEVSQI FKKNAFNYKI TKSLNDTKIE LEIDLADERN FVYGVRLIET NSPSYIMSDS 
YYRADVFLKE GGQDYDIIGW SKISVINDII EQYRKHMHFL YKTR