Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Mboo_2419 |
Symbol | |
ID | 5410495 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Candidatus Methanoregula boonei 6A8 |
Kingdom | Archaea |
Replicon accession | NC_009712 |
Strand | + |
Start bp | 2490310 |
End bp | 2492364 |
Gene Length | 2055 bp |
Protein Length | 684 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 640869676 |
Product | PKD domain-containing protein |
Protein accession | YP_001405576 |
Protein GI | 154151958 |
COG category | [R] General function prediction only |
COG ID | [COG3291] FOG: PKD repeat |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 54 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAAACTCA AGATCTCCAT CCCGAAAAAG AAGCTCCGCC TGCCCCGTCT TAAAAAACAG GCCCGGATCC CGATCCTGAT TGCCATATGC GTCATCCTGG TTGCGCTCGG GCTGTTATTC CATATCCTGC CGGGCCCGGG CAGTCTTGCA CATTTTTTTG AGGCAAAAAC CAGCACAGAG TCACTCCAGT CCGTCGGGGG AGCAACAACC GGGCTTGCCG AACCTCTCGC GCCGCCTCTC ATAGCCGACT TCCTTGCCTC GCCCGGCTAT CAGTCAAACC CCCTCTCCGT CCAGTTCTTC GATATGAGCA GGGGCAGCCC GGGCGCCTGG CAGTGGGACT TTGGCGACAA TTCCAGTTCA TCCCTCCAGT ACCCGGTTCA TGAGTATGCC TCCGGGGGCC TCTACAACGT CGCCCTCACG GTCACCCGGC AGGACGGCGC CCGGGAGACC GTCACGGTAG ACGATGTCCT TGATACCCGG CAGGCAACCG AATCGCAGGT TCTTCTCGAT ACCATCCGCA ACGGTGCAAT AAAGAAAGGA TCGTACCTCT CCTTTATTTC GGACGACAGT AACTCGTCGG TCACCGTGAA CGGGGCCCGG ATAGCACTGC CGGCAGGATC GCTTGTCAAG ATCCGGGCCG GCTCTGACTC CACGACCGGT ACGGTCTCCC TGCGGGGCGG AAACATCCTG GGCTGCAGCC TTGCGGATGC CACGCTCTTT GTGAACGGGA CCCAGGTGGC TAAAGGGAGC TTTGGGAACT GCAACATCCC CTCGGTCCGG CAGTACCATG CAAACCTCAC CTTTTCCGTA GAGCCGACAT ACGGGGAGGT CCGGCAGCTC CTGATCAATG GCGGCAAAAT CCTCGCAGGC CCGGGCAACA ACTACATTGT CATCTCTGAT GACACGTACT CCCCGGGCAA CGATCTGACA GTGGTTGCCG GTCCCGCGTA CTATGAGGGG ACAGCCTCAG GATATTCGAT CTCACCTGCG CTGATTGCCG GGTTCACCAC GATCTCGCCC ACAGAAGGCC CGGCCCCGCT TAATGTCTCG TTTATAGACC AGTCGGCCGG AGCACCCGTT TCATGGTCAT GGGATTTCGG GGATGGCACC GGTTCACGCG ACAAAAACCC TACACATCTT TATGCATCCC CGGGGACCTA CGATGTTTCC CTTACGGTAA ATACCGCGGA CCAGACCGAC ACCACCACAG TACAAAGCGA GGTCATCGCA ACCCCGCCCC GGGTTGTCGC CAACTTTACC GCCCGGCCGC TCACCGGCCC GGTACCTTTT ACGGTCAGGT TTACGGATCA ATCCACCGGA TTCCCGACTT CGTGGAGCTG GACCTTCCAG GAGGCATGGA ATATCTCCTT CCTCAGCAGC GGTACCAGTA GTCCATTCGC TGTTTCGACT GATCAAAATC CCGTTATAAC CTTCACAGAT CCGGGAACTT ACAATGTCTG GCTTACGGTA AACAATGCCT ACGGCAGCAG TGATATCGTG AAGAACGGGT ACATCGTGGC GACGCCATCG CCGTATAAGA TTCCAACCAA CGATATCCTC GTCCAGACCG GAAAGCCGGG ATATCTCGAA CAGAACTCAA GTGCACAGTT CGTGGTCAGC GATACCCCTG CCGCCATCAC GATCAACGGT ACCTACCATG ATCTGCCAAA AGGCGCCGTT GTCAGGATGG TGGCCGACAG CAACCAGCCA GGGGACATCA CCATCGACCA TAACAAAATC CTCAAGTTCG CGTTCCCGGA TATGGAGGTG TACGTGAACG GCGAACTGCT GGATGAGGGA TCCATAGACA GCATCTACAT CCCGTTCATG ACGCAGTTCC AGACCGGCCT GAGTTATTAT TTCGCACCCG CATCTGCGCA AACACTGGAA ACGATTAACG GTCAGAAGTA CCTTGCCAGC CTGGATAATG CCTGGATCCG CATCGATAAC CTTGGTATCA ACAGTCAGGG AACGCTCTCC CTGATCTCCG CAACAAACTC GACATCCATT GAAGGGACCA TGAACCAGAC CGTGCAGGAC TGGATTCTCG GGTAA
|
Protein sequence | MKLKISIPKK KLRLPRLKKQ ARIPILIAIC VILVALGLLF HILPGPGSLA HFFEAKTSTE SLQSVGGATT GLAEPLAPPL IADFLASPGY QSNPLSVQFF DMSRGSPGAW QWDFGDNSSS SLQYPVHEYA SGGLYNVALT VTRQDGARET VTVDDVLDTR QATESQVLLD TIRNGAIKKG SYLSFISDDS NSSVTVNGAR IALPAGSLVK IRAGSDSTTG TVSLRGGNIL GCSLADATLF VNGTQVAKGS FGNCNIPSVR QYHANLTFSV EPTYGEVRQL LINGGKILAG PGNNYIVISD DTYSPGNDLT VVAGPAYYEG TASGYSISPA LIAGFTTISP TEGPAPLNVS FIDQSAGAPV SWSWDFGDGT GSRDKNPTHL YASPGTYDVS LTVNTADQTD TTTVQSEVIA TPPRVVANFT ARPLTGPVPF TVRFTDQSTG FPTSWSWTFQ EAWNISFLSS GTSSPFAVST DQNPVITFTD PGTYNVWLTV NNAYGSSDIV KNGYIVATPS PYKIPTNDIL VQTGKPGYLE QNSSAQFVVS DTPAAITING TYHDLPKGAV VRMVADSNQP GDITIDHNKI LKFAFPDMEV YVNGELLDEG SIDSIYIPFM TQFQTGLSYY FAPASAQTLE TINGQKYLAS LDNAWIRIDN LGINSQGTLS LISATNSTSI EGTMNQTVQD WILG
|
| |