Gene Mboo_2419 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMboo_2419 
Symbol 
ID5410495 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCandidatus Methanoregula boonei 6A8 
KingdomArchaea 
Replicon accessionNC_009712 
Strand
Start bp2490310 
End bp2492364 
Gene Length2055 bp 
Protein Length684 aa 
Translation table11 
GC content57% 
IMG OID640869676 
ProductPKD domain-containing protein 
Protein accessionYP_001405576 
Protein GI154151958 
COG category[R] General function prediction only 
COG ID[COG3291] FOG: PKD repeat 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones54 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAACTCA AGATCTCCAT CCCGAAAAAG AAGCTCCGCC TGCCCCGTCT TAAAAAACAG 
GCCCGGATCC CGATCCTGAT TGCCATATGC GTCATCCTGG TTGCGCTCGG GCTGTTATTC
CATATCCTGC CGGGCCCGGG CAGTCTTGCA CATTTTTTTG AGGCAAAAAC CAGCACAGAG
TCACTCCAGT CCGTCGGGGG AGCAACAACC GGGCTTGCCG AACCTCTCGC GCCGCCTCTC
ATAGCCGACT TCCTTGCCTC GCCCGGCTAT CAGTCAAACC CCCTCTCCGT CCAGTTCTTC
GATATGAGCA GGGGCAGCCC GGGCGCCTGG CAGTGGGACT TTGGCGACAA TTCCAGTTCA
TCCCTCCAGT ACCCGGTTCA TGAGTATGCC TCCGGGGGCC TCTACAACGT CGCCCTCACG
GTCACCCGGC AGGACGGCGC CCGGGAGACC GTCACGGTAG ACGATGTCCT TGATACCCGG
CAGGCAACCG AATCGCAGGT TCTTCTCGAT ACCATCCGCA ACGGTGCAAT AAAGAAAGGA
TCGTACCTCT CCTTTATTTC GGACGACAGT AACTCGTCGG TCACCGTGAA CGGGGCCCGG
ATAGCACTGC CGGCAGGATC GCTTGTCAAG ATCCGGGCCG GCTCTGACTC CACGACCGGT
ACGGTCTCCC TGCGGGGCGG AAACATCCTG GGCTGCAGCC TTGCGGATGC CACGCTCTTT
GTGAACGGGA CCCAGGTGGC TAAAGGGAGC TTTGGGAACT GCAACATCCC CTCGGTCCGG
CAGTACCATG CAAACCTCAC CTTTTCCGTA GAGCCGACAT ACGGGGAGGT CCGGCAGCTC
CTGATCAATG GCGGCAAAAT CCTCGCAGGC CCGGGCAACA ACTACATTGT CATCTCTGAT
GACACGTACT CCCCGGGCAA CGATCTGACA GTGGTTGCCG GTCCCGCGTA CTATGAGGGG
ACAGCCTCAG GATATTCGAT CTCACCTGCG CTGATTGCCG GGTTCACCAC GATCTCGCCC
ACAGAAGGCC CGGCCCCGCT TAATGTCTCG TTTATAGACC AGTCGGCCGG AGCACCCGTT
TCATGGTCAT GGGATTTCGG GGATGGCACC GGTTCACGCG ACAAAAACCC TACACATCTT
TATGCATCCC CGGGGACCTA CGATGTTTCC CTTACGGTAA ATACCGCGGA CCAGACCGAC
ACCACCACAG TACAAAGCGA GGTCATCGCA ACCCCGCCCC GGGTTGTCGC CAACTTTACC
GCCCGGCCGC TCACCGGCCC GGTACCTTTT ACGGTCAGGT TTACGGATCA ATCCACCGGA
TTCCCGACTT CGTGGAGCTG GACCTTCCAG GAGGCATGGA ATATCTCCTT CCTCAGCAGC
GGTACCAGTA GTCCATTCGC TGTTTCGACT GATCAAAATC CCGTTATAAC CTTCACAGAT
CCGGGAACTT ACAATGTCTG GCTTACGGTA AACAATGCCT ACGGCAGCAG TGATATCGTG
AAGAACGGGT ACATCGTGGC GACGCCATCG CCGTATAAGA TTCCAACCAA CGATATCCTC
GTCCAGACCG GAAAGCCGGG ATATCTCGAA CAGAACTCAA GTGCACAGTT CGTGGTCAGC
GATACCCCTG CCGCCATCAC GATCAACGGT ACCTACCATG ATCTGCCAAA AGGCGCCGTT
GTCAGGATGG TGGCCGACAG CAACCAGCCA GGGGACATCA CCATCGACCA TAACAAAATC
CTCAAGTTCG CGTTCCCGGA TATGGAGGTG TACGTGAACG GCGAACTGCT GGATGAGGGA
TCCATAGACA GCATCTACAT CCCGTTCATG ACGCAGTTCC AGACCGGCCT GAGTTATTAT
TTCGCACCCG CATCTGCGCA AACACTGGAA ACGATTAACG GTCAGAAGTA CCTTGCCAGC
CTGGATAATG CCTGGATCCG CATCGATAAC CTTGGTATCA ACAGTCAGGG AACGCTCTCC
CTGATCTCCG CAACAAACTC GACATCCATT GAAGGGACCA TGAACCAGAC CGTGCAGGAC
TGGATTCTCG GGTAA
 
Protein sequence
MKLKISIPKK KLRLPRLKKQ ARIPILIAIC VILVALGLLF HILPGPGSLA HFFEAKTSTE 
SLQSVGGATT GLAEPLAPPL IADFLASPGY QSNPLSVQFF DMSRGSPGAW QWDFGDNSSS
SLQYPVHEYA SGGLYNVALT VTRQDGARET VTVDDVLDTR QATESQVLLD TIRNGAIKKG
SYLSFISDDS NSSVTVNGAR IALPAGSLVK IRAGSDSTTG TVSLRGGNIL GCSLADATLF
VNGTQVAKGS FGNCNIPSVR QYHANLTFSV EPTYGEVRQL LINGGKILAG PGNNYIVISD
DTYSPGNDLT VVAGPAYYEG TASGYSISPA LIAGFTTISP TEGPAPLNVS FIDQSAGAPV
SWSWDFGDGT GSRDKNPTHL YASPGTYDVS LTVNTADQTD TTTVQSEVIA TPPRVVANFT
ARPLTGPVPF TVRFTDQSTG FPTSWSWTFQ EAWNISFLSS GTSSPFAVST DQNPVITFTD
PGTYNVWLTV NNAYGSSDIV KNGYIVATPS PYKIPTNDIL VQTGKPGYLE QNSSAQFVVS
DTPAAITING TYHDLPKGAV VRMVADSNQP GDITIDHNKI LKFAFPDMEV YVNGELLDEG
SIDSIYIPFM TQFQTGLSYY FAPASAQTLE TINGQKYLAS LDNAWIRIDN LGINSQGTLS
LISATNSTSI EGTMNQTVQD WILG