| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mboo_1931 |
|---|
| Symbol | |
|---|
| ID | 5411016 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Candidatus Methanoregula boonei 6A8 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009712 |
|---|
| Strand | - |
|---|
| Start bp | 1994577 |
|---|
| End bp | 1995749 |
|---|
| Gene Length | 1173 bp |
|---|
| Protein Length | 390 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 640869170 |
|---|
| Product | DNA-directed RNA polymerase, subunit A'' |
|---|
| Protein accession | YP_001405089 |
|---|
| Protein GI | 154151471 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
|---|
| TIGRFAM ID | [TIGR02389] DNA-directed RNA polymerase, subunit A'' |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.135517 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTTGCCG ATAAGTACGA CAAGAAGATC GAGGCAGCCG GTCTCCCGCA GAAAACAAAG
GACCAGTTGC GTACCTTCCT GGAGGGCAAG GAGATCACCG ACGCCCAGTT CAAGGAAATT
CTGGAACGGG TTGAAAAAGA GTACCAATCG ACCCGGATCG AGGCCTGCGA AGCGGTGGGA
GTGATCGCCG CACAGTCGAT CGGAGAACCG GGCACCCAGA TGACGATGCG TACGTTCCAC
TACGCAGGTG TCGCAGAAAT CAACGTTACC CTTGGCCTCC CCCGCCTCAT CGAGATCATG
GATGCACGAA AAGAGCCCAG CACCCCGACA ATGACCGTGT ACCTCGAAAC CGAGTACGGT
ATTGACCGGG ACCGGGCCCG TGAGGTCAGC TGGCAGATTG AGGCCGCACC GCTTCACGAG
TTCGGTGACA TCACTACCGA CATGGAGAAT ATGCAGGTAG TGGTTCACCT CAATGTTAAG
GTCTGCGAGA AACGCAAGAT CTCCCCTTCG GAGATCATGG AAGTGGCGCC CAAGAAGATC
CGCGACCGCC GTCACTACCG TGACTTTGAG CATGATGTTG ACGAAGCAAA CGCAACCCTC
ATTTTCACGC CCAAAGACCG GGAGAGCTAC CAGAACCTTT TCCAGCTGGC CGAGCACGTC
AGGAACGTGA TTGTGCAGGG CATTGATGAT ATCCTTCGTG TCGTCGTGAG AAAGGAGGCC
GGGGAGTATA TACTTTATAC TGAGGGATCC AACCTAAAAG ATGTCTTTGA CGTTGCCGGT
GTGGACACCA CAAGAACCCG CACCAACAAC ATCAGTGAGA TCGCCCAGGT ACTTGGTATC
GAAGCGGCAA GAAATGCGAT CATCCACGAG GCCCAGTCGA CTTTGAACGA ACAGGGGATC
CTCGTAGATG TCCGTCACAT CATGCTTGTT TCTGACATGA TGTGCATGGA AGGCGAGGTC
AAGCAGATCG GCCGTCACGG TATTGCCGGT GAGAAGGAGA GCGTGCTCTC CCGTGCCGCA
TTCGAGGTGA CCGTCAACCA CCTGCTCGAT GCTGCCGTTG CAAACGAAAC CGATGAACTG
AGCGGCGTCA CCGAGAACGT TATCGTTGGC CAGCCGATCC AGCTGGGCAC CGGCGATGTA
AAGCTCGTGG CCGTCAAACA GCGAGAGAAT TAA
|
|---|
| Protein sequence | MVADKYDKKI EAAGLPQKTK DQLRTFLEGK EITDAQFKEI LERVEKEYQS TRIEACEAVG
VIAAQSIGEP GTQMTMRTFH YAGVAEINVT LGLPRLIEIM DARKEPSTPT MTVYLETEYG
IDRDRAREVS WQIEAAPLHE FGDITTDMEN MQVVVHLNVK VCEKRKISPS EIMEVAPKKI
RDRRHYRDFE HDVDEANATL IFTPKDRESY QNLFQLAEHV RNVIVQGIDD ILRVVVRKEA
GEYILYTEGS NLKDVFDVAG VDTTRTRTNN ISEIAQVLGI EAARNAIIHE AQSTLNEQGI
LVDVRHIMLV SDMMCMEGEV KQIGRHGIAG EKESVLSRAA FEVTVNHLLD AAVANETDEL
SGVTENVIVG QPIQLGTGDV KLVAVKQREN
|
|---|
| |