Gene Mboo_1872 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMboo_1872 
Symbol 
ID5410341 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCandidatus Methanoregula boonei 6A8 
KingdomArchaea 
Replicon accessionNC_009712 
Strand
Start bp1943565 
End bp1944128 
Gene Length564 bp 
Protein Length187 aa 
Translation table11 
GC content55% 
IMG OID640869110 
Producthypothetical protein 
Protein accessionYP_001405030 
Protein GI154151412 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG1491] Predicted RNA-binding protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value0.173998 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGGCCG AGAAGAAAGA GGTCAACGCG ATCGTACTGG ACGTGCTCAT GAAAGGGCAT 
GCCGGGGATC CCCGGCCCCA GTTCAAGCGT GAACCGGTTA TCCAGGCAAT GGGCCTTGAG
CAGTTCAAAC TGCTCGAGCT GATCCCCAAA CCCGGTGTGG TCATCAACCT GCATGACAAG
ATGTATATCG GGGACTCTGA AAGGGACAAG ATCGAGCGGG TGAAACGCCG GATCGGGTAC
GAAGAACTGA CTCCCACGGC AAAGGGAGAG CTGCCGTTTA TGGTCGAGCA GGTGGTAAAG
GAGCGCGAAC AGGACTTTGT CACTTTCTTT AACAAGGCGA TCTCGATCAC CCCCAAACTC
CACATGCTCC ACCTTCTGCC CGGCATCGGG AAGAAACTGA TGTGGGAGGT GCTTGAGTCG
CGAAACCGCA AGCCTTTCGA GAGCTTCGCA GATATCTCCA CCCGGATCAA ATCGCTGCCC
CACCCGGAGA AGATGATCGA GGCCCGTATC CTCGAAGAAC TGCAGGACAA GGACGTCAAG
TACCATCTCT TTACCACAAA ATGA
 
Protein sequence
MKAEKKEVNA IVLDVLMKGH AGDPRPQFKR EPVIQAMGLE QFKLLELIPK PGVVINLHDK 
MYIGDSERDK IERVKRRIGY EELTPTAKGE LPFMVEQVVK EREQDFVTFF NKAISITPKL
HMLHLLPGIG KKLMWEVLES RNRKPFESFA DISTRIKSLP HPEKMIEARI LEELQDKDVK
YHLFTTK