| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mboo_1812 |
|---|
| Symbol | |
|---|
| ID | 5411446 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Candidatus Methanoregula boonei 6A8 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009712 |
|---|
| Strand | + |
|---|
| Start bp | 1893299 |
|---|
| End bp | 1897471 |
|---|
| Gene Length | 4173 bp |
|---|
| Protein Length | 1390 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 640869047 |
|---|
| Product | signal transduction histidine kinase |
|---|
| Protein accession | YP_001404971 |
|---|
| Protein GI | 154151353 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3920] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 0.155927 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGAGAT CCAAAATACG ACAATCACAA AAAAGCCCCC CGGCAAAGCC TCCCCACGAT
AAAACATTTC ATTTTCTTAT TGTTGAAGAC GATCCATCCC ATGCCGAGTT GATCCGGCGC
GGGCTTCTGG CATACAAAAC GCCGTACCGG CTGACGATCG AAACAACCCT TGCAGGAGCA
CGAAAGAGCA TCCTGGCCGA TCCGCCGGAC CTCCTGATCC TGGACAGAGG GCTTCCTGAT
GGGAGCGGCG AAGAACTGCT GCCAGAGAGT CCGGAAGAAC TGCAGTTCCC GGTCATTGTC
ATGACCAGTT ACGGGAACGA GGCCGAGGGT ACCCGGCTGG TCCGGAGGGG CGCTGTCGAC
TATCTTGTGA AGGGCAAAGC GGTATTTGAT GATCTTGCCC ATATCACCGA ACGTTCGCTC
GGGATATGGA AAAACCGCCA GTCAGAACGG GTACTTCTCC ACCGGTTGAC CACAAGGGAG
TCAGTACTGC GCGCCCTCCT GAACAATCCT GCCGATTCGA TCGCACTTCT CGACCGGAGC
GGTACTATCC TCGATCTGAA CCCTACCCTT GCAAAAGGAA TGGGGAAGAC CCCTCCTGAG
GTTTTAGGAA CCTGCATTTA CGATTATCTC CCGGCCGATC TCGCATCAGT GCGACGCAGG
AAAGTTGAAA ATGTGTTCAA AACAGGAAAA ATGGAACGTT TTGAGGATGA GCACGCGGGA
TGCTGGTACG ATAATATTAT CCAGCCGATA CCAGGTGAAA ACGACAAAGT CGTCCAGGTC
CTTATCATAG CACGGGACAT TACCGAACGC AGGTGTGCGG AAAAGGCTCT TGCCGAAAGC
AGCAAACGGT TTGCCCAGGT AGCCGAGACC GCAGGAGAAT GGATCTGGGA AGTGGATGCA
GACGGCAGAT ACACCTACAG CAGCCCGGTC GTGAAAAATC TTCTCGGGTA TACCCCGGAA
GAGATCGTGG GAACGTATTT TTACGATTAT TTCGAACCCG GCCAGAGAGT GACTCTCATG
AACGCGGCGC TCGCCGCATT CAAGGAAAAA AAAGCATTCG GTAATTTTAT CAATCCCAAC
CTACACAAGG ACGGCCGCAT CGTCATGCTG GAAACCCGAG GCATCCCGGT CCTTGCCTAT
GACGGCACGC TTCTTGGCTA CCGTGGCGCA GATCTCGACG TTACCGATCG GATCCGTGCC
GAAAAAGCCC TGCGCGAGAG CGAGGAGCGG TACCGCACGC TTGTCGATGA ACTCCCGGAC
TTTGTGATCG TCCACCGTGA GGGCAAGCTG CTCTATGTCA ACGCGGCGAT CACACGGCTG
GTGGGAAGGC CCGCAGAACA ATTACAACAC ACCAATATCT TAGCGTATAT CCCGGAAGAG
TCGCAGGAGA TTGTCCGCGG GGCGATAAAA AAACGGGCCG GTGGCGGCCC GGTACTGCCC
TATGTTGTTA AGGTTGCTGC CCCGGGTGGC GGTCCTTTGC GTTGGGTTGA GATCCGGGGC
GCAGCCATCC TGTTTGAAGG ACAGCCGGCA ACCCTCAACG TGCTGACCGA CATCACTGAG
AAAAAATGGG CACAGGATGC ACTCTTTGCA AGCGAGCAGA AATTCCGGAC CCTTGCCGAT
TATACTTTTG ACTGGGAGTA CTGGATCGGT GCCGATGGAA AATTTGTCTA TGTATCTCCT
TCCTGCGAGC GGATCAGCGG TTATCCCCCG GATGAATTCT ACCGCAACGA AAAACTCTTC
GATGATCTCA TCGTCCCGGA GGACAGGGAG AGATTCCGGA CCCATTGCGA TCAACTCAGT
AATTCCCCGG ATACCGGGAT CCTCGAATTC CGCATCCGGA CAAAAAAGGG AGACCTCATG
TGGATCGGGC ATGTCTGCCA TCCGATCTAT AGCCCCGATG GAGAATATCT TGGACGCAGA
GGAAGTAACC GGGACATCAC CCAGAGAAAG GCGGCAGAAG ATGCCCTAAA AGGGAGCGAA
ACCCGGTTCC GTTTGCTCAT CCAGAATGCA TCCGATATGA TACGAATCCT TGACCGTCAG
GGAAAGATCC GGTACGAGTC CCCTTCAACG GAGAGAATAC TTGGCTACCC GGAGGGAGCC
CTGACAGGGA AGGAGCCCTG GCCCTATATC CACCCTGACG ATGTAGAGCG GGTAAGATCA
GATTTCCAGA CAATATTTGA CCAGACCAAC GATGGCATTC CAACGGAATT CCGGGTACGC
CGTGCAGATG GCACCTATAT CTGGGTTGAT TCCATTGGCG CAAATCTGCT GGGGGTTCAG
GGGGTAGACG GCATTGTGAT CACAACCCGG CCCATCGGAC AGCGCAAGGA GATAGAGCAG
GCGCTCCTGG AAAGCCAGGC AAAGGTTCGC GAATCAGAGG AATTCCTGCG CCAGGTGATC
AACGGTGCGG GAGAAGGCAT CATAGGATAT GACCGGGATC TCCATATCAC CCTCTGGAAC
CGGTTTATGG AAGAATTGAC CGGTTACCCG GCAGAGGAGG TGCTGGGAAA GGATGTCTTT
GAGATCTTCC CGTTCCTCAA AGAGGAGGGG ATCGATGTTT TGCTCCTCAA GGCACTCGAA
GGAAAGAGCG GGCAGTCTGC AGATATCCCG TTCATCTTTG GCCGGACCGG TAAAAAAGGG
TGGGGACAGG GGATTTATTC GCCGATCCAT GACGCCAACG GCGCAATCGT GGGCGCTATG
GGGATCATCA GGGACATCAC GGAGGTCCGT AAGGCACAGC GGGCCCTTGG GGAAAGCGAG
GAGAAATACC GGCTCTTTAC AGAAACTTCT CCGGATATGA TTTATTTTAT CGACCCGGAG
GGGCATATCC GGTTTGTCAA CCGCCGTGCA GCAGAGGGAC TGCTGATGAA GCCGGAAGAT
ATCATAGGTA AACACCTCAA CGATATTTTC CTGCCCGATA CCGCCCGGAA CCATCTCATC
GGGATACAGC ACATCGTTGA AACACGCGAG CCGTCGGAAA CTGAGCTGAT CGAGAACCTG
CCTTCCGGCA ACATCTGGAT CGAAGCCCGG CTTTCTCCGC TGTTTGACGC AGAGAATAAC
GTGCTGGGGG TCTTGGGAAT CTCCCATGAT ATCACTGACC GGAAAAAAGC CCAGATCGCC
CTTGAGGAAA GTGAGGAGAG GTACCGCAGC CTTTTCCGCC GATCGCCGGT CGGGATCACC
CTTACCGATA TCGCGGGAAA CATACTCGAG ATAAACGAGA CCATGCTCGG GATGTTCGGG
TACACCCGGG ACGAGATTGG TTCAACCAAT ATCTCTTCTT TTTACGCGGA TTCCGAAATC
CGGCTACAGC TGGCAGGCAC CGTCCTTGCC AAAGGCTCTG TCAGCGATTA CGAGCTGGTG
TGCCGGCGCC GCGATGGCAG TACTTTTCCC GTCCTCCTTA ACAGTGCCAG GATCCTGCGC
GGGGGGGAGC GGTTATTCCA GTCCACATTC GTCGATATCA CAGACCGCAA AATGATGGAA
GAGGAGATCC GGTCGCTGAA CCGTGCACTT GAACAGCGGG TCATCCAGCG TACCGATCAG
CTTAATGCCA CCCTTGAGGA AAAAGAGGTC CTGCTCCGCG AGATCCATCA CCGGGTAAAA
AATAACCTCC AGATCATCAT CAGCATCCTC CGGCTCCAGA ACCGCCATAT CACCGATCCC
GGGATGCAGG CGATCCTTCT TGACAGCGAG AGCCGGGTCC GGTCCATGGC GCTGGTCCAT
GAGAAACTCT ACCGGTCTAT CGATCTCGCG CATATCGATA TCGGCGATTA TCTTCGGGAT
CTCACCCGGT ACCTGTTCAA TACCTATTCG GTAAACCAGG GCCGGGTGGC ATTCAAGGTG
GAGATTGCCG ATCTCTCACT GGATATCAAC CGCGCCATCC CGATAGGCCT GATCTTAAAC
GAATTGATCG CCAATGCCCT CAAGCATGCG TTTACTCCGC AGACAGGAGG GGAGATCATG
ATCACGGGAT CGCAGACAAT TGATACGATT GTCATCTCAG TACAGGATAA CGGGGCAGGG
ATGCCGGTGG ATTTTGACTG GCGCAATTCA CCGTCACTGG GCATGCACCT GGTGGTGACC
CTGATCGAGC AGGTCCGAGG GACCATTGAA AAAGAAGAGA ACGGCACGGG AACCCGGTTT
GTCCTCAGGA TCCCCCGGCA CGCCGGAACG TGA
|
|---|
| Protein sequence | MKRSKIRQSQ KSPPAKPPHD KTFHFLIVED DPSHAELIRR GLLAYKTPYR LTIETTLAGA
RKSILADPPD LLILDRGLPD GSGEELLPES PEELQFPVIV MTSYGNEAEG TRLVRRGAVD
YLVKGKAVFD DLAHITERSL GIWKNRQSER VLLHRLTTRE SVLRALLNNP ADSIALLDRS
GTILDLNPTL AKGMGKTPPE VLGTCIYDYL PADLASVRRR KVENVFKTGK MERFEDEHAG
CWYDNIIQPI PGENDKVVQV LIIARDITER RCAEKALAES SKRFAQVAET AGEWIWEVDA
DGRYTYSSPV VKNLLGYTPE EIVGTYFYDY FEPGQRVTLM NAALAAFKEK KAFGNFINPN
LHKDGRIVML ETRGIPVLAY DGTLLGYRGA DLDVTDRIRA EKALRESEER YRTLVDELPD
FVIVHREGKL LYVNAAITRL VGRPAEQLQH TNILAYIPEE SQEIVRGAIK KRAGGGPVLP
YVVKVAAPGG GPLRWVEIRG AAILFEGQPA TLNVLTDITE KKWAQDALFA SEQKFRTLAD
YTFDWEYWIG ADGKFVYVSP SCERISGYPP DEFYRNEKLF DDLIVPEDRE RFRTHCDQLS
NSPDTGILEF RIRTKKGDLM WIGHVCHPIY SPDGEYLGRR GSNRDITQRK AAEDALKGSE
TRFRLLIQNA SDMIRILDRQ GKIRYESPST ERILGYPEGA LTGKEPWPYI HPDDVERVRS
DFQTIFDQTN DGIPTEFRVR RADGTYIWVD SIGANLLGVQ GVDGIVITTR PIGQRKEIEQ
ALLESQAKVR ESEEFLRQVI NGAGEGIIGY DRDLHITLWN RFMEELTGYP AEEVLGKDVF
EIFPFLKEEG IDVLLLKALE GKSGQSADIP FIFGRTGKKG WGQGIYSPIH DANGAIVGAM
GIIRDITEVR KAQRALGESE EKYRLFTETS PDMIYFIDPE GHIRFVNRRA AEGLLMKPED
IIGKHLNDIF LPDTARNHLI GIQHIVETRE PSETELIENL PSGNIWIEAR LSPLFDAENN
VLGVLGISHD ITDRKKAQIA LEESEERYRS LFRRSPVGIT LTDIAGNILE INETMLGMFG
YTRDEIGSTN ISSFYADSEI RLQLAGTVLA KGSVSDYELV CRRRDGSTFP VLLNSARILR
GGERLFQSTF VDITDRKMME EEIRSLNRAL EQRVIQRTDQ LNATLEEKEV LLREIHHRVK
NNLQIIISIL RLQNRHITDP GMQAILLDSE SRVRSMALVH EKLYRSIDLA HIDIGDYLRD
LTRYLFNTYS VNQGRVAFKV EIADLSLDIN RAIPIGLILN ELIANALKHA FTPQTGGEIM
ITGSQTIDTI VISVQDNGAG MPVDFDWRNS PSLGMHLVVT LIEQVRGTIE KEENGTGTRF
VLRIPRHAGT
|
|---|
| |