Gene Mboo_1652 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMboo_1652 
Symbol 
ID5410561 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCandidatus Methanoregula boonei 6A8 
KingdomArchaea 
Replicon accessionNC_009712 
Strand
Start bp1728089 
End bp1730152 
Gene Length2064 bp 
Protein Length687 aa 
Translation table11 
GC content55% 
IMG OID640868886 
Productstage II sporulation E family protein 
Protein accessionYP_001404812 
Protein GI154151194 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG2208] Serine phosphatase RsbU, regulator of sigma subunit 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value0.0030302 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
GTGGCGCTTG CTCTTACCGG GTATTTTGCG TTTTTTGCCA TTACCCGTGT GGGCTCCTAT 
GCACAGGGGA GCAGTGAGGC ACTGGGAATG GGGATGGCAG ACCAGAGCTC GGCAGCGCTT
CTGTCTCTGG GAGAGGAGTA CCTGCAGCGC ATCACCGCCG ACCAGGCAAA TGTCACAGAT
ACCCTCTTTG CCGATACCGA TACCGATACC GAGATGGAGA TCCTTGCAGC ACAGACCGCG
GAGCTCAAGC GTAATTCCCC GGTGAAGGCT ATAACTCCGA CCTATCTGGC AACGCAACCT
CCATCGGATC CCATGGCCGG GGCGGTGCTG GTCTTTGCCC AAAATGCAAC TGTAACCCCG
GAATCACAGG AGGCGCGAAC GCTTGCCGGT CTTGCAGACA GTCTCAAAGG GGTATATGAC
TCAGATGAGG ATATGGCGAG TGTCTATATT GGCACGGCCT CCGGCATGAT GCTCTATTAC
CCGGGACAGG GGAATTTCCC CAAAGACTAT GATCCCCGGA CACGGCAATG GTTTACTGAT
GCTGAAGCGT CGCCAGAGAT TGTCTGGTCC GACGCTCCGT ATGTAGATGC TGGTGGCAAT
GGTCTTGTTA TGACCTCGTC GGAGGATATA ACCGGTCCGG CCTATGGAAA CTGGGTAATC
GGATCTGATG TAAAGACCGA TACGATTAAT GAGGATTTTA TCGGGAAAAC GCTGGGCGGG
AACGGGTATG CCGTGCTCAT CAACCAGGAG GGTACGATCA TCAGCCAGCC CGGGCTGTCT
GCCGGCAATC AGACCTGGAA CAAGCCATTC ACCCAGAAAA ATGTGCTCTC GGGCAGCGCT
CCCGATCTCC GTGCCGTGGT CACCAATATG ACCGCCGGAA AGACCGGTAT CGGCACAGTA
AACTTCAGCG GGACAGAGAC ATACGTTGCC TATGCACCGG TCCGTTCCAT GAACTGGAGC
CTTGCGGTCT CGATCCCGGT CAGCCAGATC ACTGAACCGG TTCAGGAGTT CACCGGGAAA
ATTGAAGATG CGACCCGGGA TACCGGGACA CAGATTACTG CCCAGACAGA CTGGCTCAAG
GAAGTTTTTG CGATCCTTTT TGTCGTTATC CTGCTCGTGG TCCTGCTTGT GTCCATTGAA
CTCAGCCGGG TGATTACCCG GCCCGTTGAG CAGCTCAAAG AGGGAGCAGC GGCCATCGGT
GAAGGGGACC TCGCGTTCCG TGTGAATATC CAGTCGGGTG ACGAATTTGA GGATCTTGCC
CGGTCCTTCA ATGTCATGGC CGGTGCGCTC CAGGAAAATA TTGAAAATCT CCGGCGGACT
ACCGCGGAAA AGGAGCGGTA CGCAAAAGAA CTGGAGATTG CCCGCTCCAT CCAGACCAGT
TTCCTCCCTG AAAAAATGCC GGACATTCCC GGGTATGATA TTTCGGCAGT TATGATACCG
GCGATGGAAG TGGGCGGGGA CTTTTACGAT ATTATCCCGG CAGCTGATGG AAAATGGGCG
TTTGTCATTG CAGATGTCTC CGGGAAAGGG GTCAGCGCCG CACTCTTCAT GGCCATGTCA
AGAACGCTGC TTCGCGCCGG CCTTGAGAAT GCATCCGATC TTTCCTGTGC TATTGGTACT
GCAAACCAGG TCATATCCCG GAACGCACCG TCATGTATGT TTGTAACAGT ATTTACTGCG
CTCCTCGATC TTCCTGCCCG AACGTTCACC TGCATCAATG CCGGTCACAA TCCACCTCTT
CTTGTCCGGG GTAAGAGCGG CGAGACGGTG TTTTTCCATG AAGGTGGCGT CGCGCTGGGA
GTCCAGCCTG AAATCAAAAG CGTCCAGGAA TGCGTGCAGC TCCAATCCGG GGATCTCGTG
ATCCTGTATA CTGACGGCGT GACTGAGGCC TTCGATGCTG CGTATACCCC GTTTGGCGAG
GATCGGTTGG TAGAAATCGC AAAAGAGTGC AGCAACCTTC CGGCTGACCG GGTAAGGGAG
GGGATCATAG CGGGAATCCG CGCATTTACC GGCCCGGTTC CCCAGTCTGA CGATATCACC
CTCGTCGTGA TCCGGGTGCT GTAA
 
Protein sequence
MALALTGYFA FFAITRVGSY AQGSSEALGM GMADQSSAAL LSLGEEYLQR ITADQANVTD 
TLFADTDTDT EMEILAAQTA ELKRNSPVKA ITPTYLATQP PSDPMAGAVL VFAQNATVTP
ESQEARTLAG LADSLKGVYD SDEDMASVYI GTASGMMLYY PGQGNFPKDY DPRTRQWFTD
AEASPEIVWS DAPYVDAGGN GLVMTSSEDI TGPAYGNWVI GSDVKTDTIN EDFIGKTLGG
NGYAVLINQE GTIISQPGLS AGNQTWNKPF TQKNVLSGSA PDLRAVVTNM TAGKTGIGTV
NFSGTETYVA YAPVRSMNWS LAVSIPVSQI TEPVQEFTGK IEDATRDTGT QITAQTDWLK
EVFAILFVVI LLVVLLVSIE LSRVITRPVE QLKEGAAAIG EGDLAFRVNI QSGDEFEDLA
RSFNVMAGAL QENIENLRRT TAEKERYAKE LEIARSIQTS FLPEKMPDIP GYDISAVMIP
AMEVGGDFYD IIPAADGKWA FVIADVSGKG VSAALFMAMS RTLLRAGLEN ASDLSCAIGT
ANQVISRNAP SCMFVTVFTA LLDLPARTFT CINAGHNPPL LVRGKSGETV FFHEGGVALG
VQPEIKSVQE CVQLQSGDLV ILYTDGVTEA FDAAYTPFGE DRLVEIAKEC SNLPADRVRE
GIIAGIRAFT GPVPQSDDIT LVVIRVL