Gene Mboo_1616 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMboo_1616 
Symbol 
ID5412185 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCandidatus Methanoregula boonei 6A8 
KingdomArchaea 
Replicon accessionNC_009712 
Strand
Start bp1689688 
End bp1691367 
Gene Length1680 bp 
Protein Length559 aa 
Translation table11 
GC content58% 
IMG OID640868850 
Productputative PAS/PAC sensor protein 
Protein accessionYP_001404776 
Protein GI154151158 
COG category[S] Function unknown 
COG ID[COG1624] Uncharacterized conserved protein 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.477909 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value0.117342 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATCTCTG TCCTGTTTGT CGATGACAAT ACCGAGTTCC TTGCGCAGTT CCGCCCGGTC 
CTTGAAAAGA CCGGCGAGAT GAAGCTTGAG GTGGTGGCCT CCACCAAGCA GGCAATCGAG
AAACTCAAGA ACCGGGCCTT TGATGTGATT GTCTGTTACG AGGACATCTC GCCGGTCAAC
GGCATCGATT TTGTCCCCGA CATGGATGGC GTCGGCTTTT TGCGATACCT CCGCTCCATG
GGAAACCCCA CACCGGTCCT CCTTTTTCAT CGTAAAAGCG AGAGCCGGGT GGCTTTTGCC
GAGGTCAGCA ACGGCTCGGA GATCGCCATT CCCCGCGCTG CTGACCTGCG TTCACCGGCA
GCAGATCTCC TCACGCTCAT CAGGCAGGCT GCGCTAAGAA AGAAAGCCGA GCGCGACATC
AAGGCGCAGA ACGATCAGCT CACCGCGATT CTCTCGGCAA CGCCTCTTGG AATCTTCAAC
ATGAAGAACG GGATCATCGA ATGGGTCAAC CATCCGCTCA CAGCCCTTCT TGGAGTCCCG
GAGTCCTCGA TCGTGGGAAA ACCGGTCCGC TCGCTTTTCG TAACCGAGGA GGAATACGTG
CAGGTCTGCC GGGACCTCCA GATCCGCCGG GACGTGCTCG GGAACGGGTG TGCTGACTGC
GAACTTGTCC GCCCGGGCGG GAGCATCCTT CCTTGCACTC TCCAGGCCAG GCTTCTTGAC
CCGCTTGATG CAAAAAAAGG CGGTACCGTT GTCGTCACCG ACATCTCCGA GCGGAAAAAG
ATGCGCGATG CCCTCAAGGA GAGCGAGGCA AAGTACCGCG AGATGATGCA GAATGCCCAG
AGCATCATCG TGCGTATGGA CATGCAGGGC ACGATCACGT ATGTCAACAC CTACGCGGCG
GCGTTCTTCG ATTACCCCGA GGCAGGCCTT GTCGGGAAGA ACGTGGTCGG GACCATAGCT
CCCGAGAAGA ACCGGGGCGG CCATGATCTC TCGATGATGG CAAACGATCT CGGGTTCAAT
GCCGAGGGGT ACGCGATCAA CGTCAGCGAG AATATCCGGC GGAACGGGGA TATTGTCTGG
ATCGCGTGGA TCAACAAGGC GATCCGCGAC CCGCAGGGCC ATATCGTGGA AGTGCTCTGT
ATAGGTCACG ATATCACCGA CCGGAAACGG AGCGGGGAAG TACGGATCAG CACCGATACC
TGGAAAGACC AGGTGGTTGC AGATACCGAT GTGCGCGAAG AGGTCTTTGA TTCCGTCTTC
CATATCTGCA CCGAGATCTC GATCGAGGGC AGGGAAGGAA AACCGGTGGG CACGACCTTT
TTGATCGGCG ACACCAAAAA CGTGCTTGCC AAGTCCCGCC AGATCATGCT CAACGCCTTC
GAGGGCCATG TCCCCGAGAT GCGCATGGTC ACCAACCCCG ACTTAAAGGA GAACATCAAG
GAGTTTGCCC AGCTTGACGG GGCATTCGTG GTCTCGGGCG ACGGGTTCAT CGAGGCTTCG
GGACGGTACA TCACGGTGGA TTCAAGCAAG GTGACGCTCC CCAAGGGCAT GGGCACCCGC
CACAACTCGG TTGCCGCAAT AACAAGCGTG ACAAGGGCCG TGGGCATCGT GGTCTCCCAG
AGTGGCGGCG GGATCACGAT CTTCAAGAAC GGGCTGATTT TGAAGAAGAT CACGCTATGA
 
Protein sequence
MISVLFVDDN TEFLAQFRPV LEKTGEMKLE VVASTKQAIE KLKNRAFDVI VCYEDISPVN 
GIDFVPDMDG VGFLRYLRSM GNPTPVLLFH RKSESRVAFA EVSNGSEIAI PRAADLRSPA
ADLLTLIRQA ALRKKAERDI KAQNDQLTAI LSATPLGIFN MKNGIIEWVN HPLTALLGVP
ESSIVGKPVR SLFVTEEEYV QVCRDLQIRR DVLGNGCADC ELVRPGGSIL PCTLQARLLD
PLDAKKGGTV VVTDISERKK MRDALKESEA KYREMMQNAQ SIIVRMDMQG TITYVNTYAA
AFFDYPEAGL VGKNVVGTIA PEKNRGGHDL SMMANDLGFN AEGYAINVSE NIRRNGDIVW
IAWINKAIRD PQGHIVEVLC IGHDITDRKR SGEVRISTDT WKDQVVADTD VREEVFDSVF
HICTEISIEG REGKPVGTTF LIGDTKNVLA KSRQIMLNAF EGHVPEMRMV TNPDLKENIK
EFAQLDGAFV VSGDGFIEAS GRYITVDSSK VTLPKGMGTR HNSVAAITSV TRAVGIVVSQ
SGGGITIFKN GLILKKITL