| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mboo_1578 |
|---|
| Symbol | |
|---|
| ID | 5410590 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Candidatus Methanoregula boonei 6A8 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009712 |
|---|
| Strand | + |
|---|
| Start bp | 1646789 |
|---|
| End bp | 1648780 |
|---|
| Gene Length | 1992 bp |
|---|
| Protein Length | 663 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 640868812 |
|---|
| Product | methyl-accepting chemotaxis sensory transducer |
|---|
| Protein accession | YP_001404738 |
|---|
| Protein GI | 154151120 |
|---|
| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.365209 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 0.192344 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACATGA CACCACTGGA ACTGGCAGTA AAAAAAGCCG CAGAAGGGGA CCTTGCGGTC
CGCATTGACG AGAACCATGC AGAGGCAGAA CTGCGTCCGC TGGCACAGCA GATAAACCGG
CTTATTGCAA AGGCATCGGA CACGGCGGAA AAAAAGCAGC GGGCAGATAT CATGATCAAG
TACAACCCGC TTGCGATTGC CATCTTAAAG AAAGACCGGG CAATTATCAA TATCAACAAA
AAATACGAAT CGCTCTGGCG CGGGACCCGG GAAGAGCTCT TGAAAAAGCG GCTTTATGAC
TTCGATATTA CGGTCATATC CGGCGATCAC CTCTATGCCT GCTTTGAGAC ACGCAAGCTT
GCCGAAAGCC ACTGCCGGGT GAAGTGGGCT GACGGCACCC AGAAGTACCT GACGCTCCAG
GCCATGCCGA TGCTGGACAA GGCAGGGGAG GCTGACGGTG CATTCTATTT CTGGATCGAT
ACCACCGATC TCCATGACAA AGTTGCCGAG GCAGAACAGA TCCGGCAGCG GGCAGACCGT
ATTATCGAGG AAAACCCGTA CGCGCTCTTT ACCATCGATA CCGGGCTTAC CGTTCGTTCG
ATAAACAGTG CGTTTTTAAA GCTGACCGGG TATTCCCGGG ACGAGGCTGC TCATCTCACC
ATGAAGAATT TCCGGTTCAA GAAGAACAAA GGCGCCAGTG TCGAGGCGAC AATCACTTCA
AAGCAGCGCG GGCACGGTGA ATCGGTGATC GAGTTTCCCG CAGGCACCCT CACGCTCGAC
TGGTACTACA TCCCGCTTCT CACCGAAAAA GGCGAGGTGG AATCCCTGCT CGTCGTGTAC
AACGATATCA CCGAGCGGCG CCGGCAGGAA CAGGAAATCC AGGAACTTGT GGACGATTCA
AAGAAAAAAG CCCAGGTCCT TTCCGCAAGC GCAGCAGTTC TCGAGACCGG GCTTGCACGG
CTTGCCGAAG GGGATCTCAC CTTTATTGCA GAGATCGATG AGAAAGATCC GCTTGTGGCC
TTAAAGAAGG ATTACAACTC GGCCACCGGC TCCATAAGAA ACGTGATCGA CGAGATCGTA
AAGTCTGCCC GCCAGCTTGA CGCCACCACG GCAGAGACCG GCAAGAGCAC CCAGGAGATC
TCCCGGTCTA CCGAGCAGGT GGCGATCTCC ACCCAGGAAT CCGCAGAAGG GGCAAAAAAA
CAGATCTCCG AGATCGAGAA AGTCTCAAGC GATGTCTCTG ATCTCTCTGC CTCGATCGAG
GAGATCGCAA GCACCACCCA TGACCTTATG ACCCACGCGC AGAAGGCCGC TACCGAGGGG
AACCAGGCAG CAGAGCTGGG CAAGGTTGCA ACCGCCAAGA TGAAGGCCGT AGAAAAGATC
TCGGGAGAGA GCGTCAACGA GATCACGGCC TTAAACGAGC GTATGAAGGA GATCTCCAAC
ATCGTAAAGA TGATCGCCGA TATCTCCAGC CAGACAAACC TGCTGGCCTT AAACGCCGCG
ATCGAGGCCG CAAGAGCCGG CGAGCACGGC CGGGGTTTTG CGGTTGTGGC AGGAGAGGTC
CGAAACCTTG CCGGGGAGTC CAAGACCGCC ACCAACAATA TCGAGACCCT GATTGGCTCC
ATCCAGAACA ACAGCGAGAA GACCGCGGCG GCAATCAGGA ACTCCTACCA GGAGATCCAG
ACAGGTATCG AGAGTGTCAA CCAGACCATC GAGGTACTCA ACCGGATCAT CTCCGAAGCC
CACGTGGTCT CGCAGGGGGT TACCGAGATC ACCAAGGCCA CCGAGGCTCA GGCCGAAGCC
ACAAACCGGG TGATGCAGGG CATGGAGCAG ACAAGCACCC TCACCCATGA AAACCAGCAG
CGCATGGAGG ACATGGCAGC CCTTGCAGAG GAGACAAGCG CCTCCACCCA GGAGATCGCC
AGTGCATCCT CAGAGCTCTC CCGCATGGCG GAGAGACTTA AAGTCGCAAC CGACAAATTC
AAGTTACGGT GA
|
|---|
| Protein sequence | MDMTPLELAV KKAAEGDLAV RIDENHAEAE LRPLAQQINR LIAKASDTAE KKQRADIMIK
YNPLAIAILK KDRAIININK KYESLWRGTR EELLKKRLYD FDITVISGDH LYACFETRKL
AESHCRVKWA DGTQKYLTLQ AMPMLDKAGE ADGAFYFWID TTDLHDKVAE AEQIRQRADR
IIEENPYALF TIDTGLTVRS INSAFLKLTG YSRDEAAHLT MKNFRFKKNK GASVEATITS
KQRGHGESVI EFPAGTLTLD WYYIPLLTEK GEVESLLVVY NDITERRRQE QEIQELVDDS
KKKAQVLSAS AAVLETGLAR LAEGDLTFIA EIDEKDPLVA LKKDYNSATG SIRNVIDEIV
KSARQLDATT AETGKSTQEI SRSTEQVAIS TQESAEGAKK QISEIEKVSS DVSDLSASIE
EIASTTHDLM THAQKAATEG NQAAELGKVA TAKMKAVEKI SGESVNEITA LNERMKEISN
IVKMIADISS QTNLLALNAA IEAARAGEHG RGFAVVAGEV RNLAGESKTA TNNIETLIGS
IQNNSEKTAA AIRNSYQEIQ TGIESVNQTI EVLNRIISEA HVVSQGVTEI TKATEAQAEA
TNRVMQGMEQ TSTLTHENQQ RMEDMAALAE ETSASTQEIA SASSELSRMA ERLKVATDKF
KLR
|
|---|
| |