| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mboo_1563 |
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| Symbol | |
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| ID | 5410088 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Candidatus Methanoregula boonei 6A8 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009712 |
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| Strand | + |
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| Start bp | 1630921 |
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| End bp | 1632309 |
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| Gene Length | 1389 bp |
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| Protein Length | 462 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 640868797 |
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| Product | shikimate 5-dehydrogenase |
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| Protein accession | YP_001404723 |
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| Protein GI | 154151105 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0169] Shikimate 5-dehydrogenase
[COG0703] Shikimate kinase |
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| TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAAGAGGA TCGTGCTCTT TGGGTACCGC GGCACGGGAA AGACCGCGAT TGGCACGGTA
CTTGCACAGA AACTTGGCGT ACCGTTTCTC GATACCGATG CGCTCGTGGA GCAGCAGGCC
GGCCGGACCA TTCCGGAGAT CTTCCGCGAC TCCGGGGAAG CGGGGTTCCG GGCACGGGAG
CGTGAGGCCG TCTCCGGTCT CCCGGACCGG GACGCCATCA TTGCCACCGG GGGCGGCGTG
GTCATGGACC CGGCAAATAT GGAGCATCTG CGAAAGGAGA GCGTCTGCGT GCTGCTCTCT
GCTGACCCAA ACGTTATCGG GCACCGGCTC GCACATGCCC CCCGCCCGGC GCTGACCAGT
CTTTCTCCCA CGGATGAGAT TACAGCAATG CTCAAGCACC GCCGCCCGGC CTACGCAGCA
GCAGCCGACT TCTGCATTGA CACCGGCCGG ACAACAGCCG GGGAGGCGGC CGAAAAGATC
CTCACTCTTC TTGGGGCAGG GAGCATCCCG GATACGGCAC GCCACACTGC GGCCCGCTGG
TTTGCCGCAA CGCCGCTTCC GGCACCTGAA AAGGAAGAAC TGGAAAGAAA ACTTCTTGGC
CCCGGATACG ATCCGCAGAC CCGGTTTTTG GGCGTTGCCG GCTGGCCCTG CGGCCACAGC
AAAAGCCCGG TTCTCTTCAA CCGGCTCTTT GAACACTACC GGCTCAACTG CCATTACACC
CGGTTTGAGG CGCCCGAAAT CGGCCCTGTC ATGGAGATGG CCCGGCTCAT CAGTGCAAAA
GGGCTTTCGG TCACGATCCC TTTTAAGCAG GACGTGATGT CGTACCTTGA TGAAATCGAT
GAGGCAGCCC AAAAGATCGG GGCGGTAAAC ACCGTGGTCT TTGCCTGCGG AAGGGCGTAC
GGATGGAACA CCGACTGGAT CGGGATCAGA AAACCCCTTG CCCACCTTTC CGGCTCCCGC
GCTGTACTGC TTGGCGCCGG CGGAGTTGCC GCTGCGGCAG CCTATGCGCT CAGGGACCTC
GATATGGAAA TTATTATCCT GAACCGGACG CCGGAAAAAG CCCGGGCGCT TGCGGAACGG
ACCGGCTGCC GCTTTGGGGC ATGGGACGAT TTCGACCGCA CAAACCCGGA CCTTGTGGTA
AATGCAACAT CAATCGGCAT GCAGCCGGAC ACAGGAAGCC CGCTCCGGGA CGATCAGCTC
AAAAAGGAGA TGACCGTATG TGATCTTGTG TACACCCCTC CGGTCACTTC CCTGATCGCG
GCAGCACGAA AAGCAGGCTG CACCACCATT TTGGGCACCG AGACCTTTGT CTACCAGGCA
CAGGAGCAGT TCCGGCTCTT CTTTGGGATC GATGTGCCCG ACACCACCAT ACGGGAGATA
CTGGCATGA
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| Protein sequence | MKRIVLFGYR GTGKTAIGTV LAQKLGVPFL DTDALVEQQA GRTIPEIFRD SGEAGFRARE
REAVSGLPDR DAIIATGGGV VMDPANMEHL RKESVCVLLS ADPNVIGHRL AHAPRPALTS
LSPTDEITAM LKHRRPAYAA AADFCIDTGR TTAGEAAEKI LTLLGAGSIP DTARHTAARW
FAATPLPAPE KEELERKLLG PGYDPQTRFL GVAGWPCGHS KSPVLFNRLF EHYRLNCHYT
RFEAPEIGPV MEMARLISAK GLSVTIPFKQ DVMSYLDEID EAAQKIGAVN TVVFACGRAY
GWNTDWIGIR KPLAHLSGSR AVLLGAGGVA AAAAYALRDL DMEIIILNRT PEKARALAER
TGCRFGAWDD FDRTNPDLVV NATSIGMQPD TGSPLRDDQL KKEMTVCDLV YTPPVTSLIA
AARKAGCTTI LGTETFVYQA QEQFRLFFGI DVPDTTIREI LA
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