Gene Mboo_1500 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMboo_1500 
Symbol 
ID5410874 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCandidatus Methanoregula boonei 6A8 
KingdomArchaea 
Replicon accessionNC_009712 
Strand
Start bp1557549 
End bp1559597 
Gene Length2049 bp 
Protein Length682 aa 
Translation table11 
GC content51% 
IMG OID640868735 
Producttype II secretion system protein E 
Protein accessionYP_001404661 
Protein GI154151043 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0630] Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0597313 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value0.0634104 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGGCTCACG ACGAGATAAG CACCCTTCTT AAAAAAATCC ATGGGATACA GACGCCGGAA 
GATGGAACAG CCGGCCCGGC TGCCTCACCC CGACCGGAAC CTGTGGTCGA GAGTATTGAA
GATGATACCC TAACCTCCTT ATATTCCCGG GAAAAAACCG CAATAACAAA AGAGGTATCC
AAAAAGACGT CTGCCGATAC GGTTCCTGGT GATACCGATG AGCGGATCAT CTCTGTTGAC
CAGATCTTCG ATCTCCCGGA TCTTATCCTC CCAAAAGGTG CAACATTCCG GATCGATGAG
ATCAAACTTC ATGGCAGCTT TAACGCCTTT GAGCGCTCCG GGATCGGAAT CCTGCCCGGG
GAGGTTGCAG ATATATGGAA GCGGGAATTT TCAAACGCAG GGTTCAGGGA TCTCGAAACA
AAACAGTTCC CTGAACAGGA AACGTCAAAA AAATCTTCGG CAAAGAAATC CGGACTGGCA
GCACTTTTCA GCAGCGTCCT GCATTCCGCA ACTGTGGACT ATGATCCCAG ATTACATGGC
CCCCTTGTAG ATCTCTCATT TGAACCAAGA CCCGGCATTG AAGAGATGGA GATGTATCCC
ATCAATGCCC CCTATGCATA TGTCCGCGTC ATCTATGATC ACTCAACGCA TGAATACACG
TACCAGATGA TAGAACCCGT TCTTTCCGCA TCCGAAAAAG ATCAGTTAGT GGAATTAAAA
GAACGCCTCT CAGACACTCT CGATATCAAC ACCAATGATG TTTCCAAAGA GGAGGCGCAG
CGCCTGTTCA GGAAGTCTGT GGATGATATC CTGGCAGATT TCGGGATCAG GCTCAGCCCG
GTCGAGCGTG AGAAGATCCT CTATAACCTG CACAAGGATT TTCTGGGTGA TGGCCAGATC
GATGCGATCA TGCATGACAA GTACATCGAG GATATTTCCT GCGATGGTGT CAATGTTCCC
TTATTTGCAT TCCATGCCGG TTACGAATCG ATGCAGACTA CGCTGATGTA CCATAATGCC
GAGGAACTCG ATTCATTTGT CACGAAACTT GCCCAGCGTT CCGGCAAGTA CATCTCCATT
GCGGAACCCA TCCTCGATGC GACCATGGGC GATGGTTCCC GTATCCAGAT GACCCTTGGG
CAGGAGGTAA CCGCTCACGG CTCAACATTT ACCATCCGCA AGTTCAAGGA TGAGCCGATC
ACCCCGGTAG ATCTTATCGA ATGGCACACG TTTTCCCCGC TTTCGGTTGC CTATATCTGG
CTTGCCGTCG AGAATGGCAA ATCCGCTCTT TTCGCCGGGG GAACCGCATC CGGTAAGACC
ACAGCATTAA ACGCGATCTC TCTTTTTATT CCCCCGATGG CAAAGATCGT CAGCCTTGAA
GACACACGGG AATTGAAGCT TCCCCACCCC AACTGGATCC CGAGTATAAC GCGGGAGTCG
TTTGATATGA AAGGACGCGG AGAGATCAAC ATGTACGAAC TCCTGCGTGC GGCCATGCGG
CAGCGACCTG AGTATATTGT TGTAGGGGAA GTCCGTGGCA AGGAATGCCA GACGCTCTTC
CAGGCGATGA GCACCGGCCA TGTCACGTAC TCTACGATCC ACGCGGACTC GGTGTCAAGC
ATCGTCCACC GCATCGAGAA CCCGCCCATG GATGTGCCAC GGAATATGTT CTCGGCACTC
GATTTTGTCT GCATCCAAGT GCAGGTCCAG ATGGGAGGCA AACGTATCCG TCGGAATAAG
CGGATCGTTG AGATCATCGG GATCGACCCA CGGACAAACG AACTGATCAC AAACGAGGTT
TTCAAATGGC GGTCGGCAAC CGATGAAATT ACCTATTCGG GGAAGTCCTA CATCCTTGAA
GAGATCATGG AGGCCCGTGG CTGGAACGAG AACCAGATGC GGGAGGAACT CAAGCGCCGG
CAGGAAGTGC TGGAGTGGAT GCGCATCAAA AAGATCCGGA ATTACAAGGA GGTCGCCAAG
CTCCTCATCT CCTATTACCG TGAACCCGAC GCCATTATAG AACGCGTAAG GAAGGACCTG
TATGAGTAA
 
Protein sequence
MAHDEISTLL KKIHGIQTPE DGTAGPAASP RPEPVVESIE DDTLTSLYSR EKTAITKEVS 
KKTSADTVPG DTDERIISVD QIFDLPDLIL PKGATFRIDE IKLHGSFNAF ERSGIGILPG
EVADIWKREF SNAGFRDLET KQFPEQETSK KSSAKKSGLA ALFSSVLHSA TVDYDPRLHG
PLVDLSFEPR PGIEEMEMYP INAPYAYVRV IYDHSTHEYT YQMIEPVLSA SEKDQLVELK
ERLSDTLDIN TNDVSKEEAQ RLFRKSVDDI LADFGIRLSP VEREKILYNL HKDFLGDGQI
DAIMHDKYIE DISCDGVNVP LFAFHAGYES MQTTLMYHNA EELDSFVTKL AQRSGKYISI
AEPILDATMG DGSRIQMTLG QEVTAHGSTF TIRKFKDEPI TPVDLIEWHT FSPLSVAYIW
LAVENGKSAL FAGGTASGKT TALNAISLFI PPMAKIVSLE DTRELKLPHP NWIPSITRES
FDMKGRGEIN MYELLRAAMR QRPEYIVVGE VRGKECQTLF QAMSTGHVTY STIHADSVSS
IVHRIENPPM DVPRNMFSAL DFVCIQVQVQ MGGKRIRRNK RIVEIIGIDP RTNELITNEV
FKWRSATDEI TYSGKSYILE EIMEARGWNE NQMREELKRR QEVLEWMRIK KIRNYKEVAK
LLISYYREPD AIIERVRKDL YE