| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mboo_1484 |
|---|
| Symbol | |
|---|
| ID | 5409866 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Candidatus Methanoregula boonei 6A8 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009712 |
|---|
| Strand | + |
|---|
| Start bp | 1533824 |
|---|
| End bp | 1535545 |
|---|
| Gene Length | 1722 bp |
|---|
| Protein Length | 573 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 640868719 |
|---|
| Product | circadian clock protein KaiC |
|---|
| Protein accession | YP_001404645 |
|---|
| Protein GI | 154151027 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0467] RecA-superfamily ATPases implicated in signal transduction |
|---|
| TIGRFAM ID | [TIGR02655] circadian clock protein KaiC |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0275855 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAAA ATAAGACTGC TGCAATCGTG GGAGCGGCAG AAATCGAAAA AGTCCACTCA
GGGATCAAGG GTCTTGACGA TATAACAGGG GGCGGGCTCC CCAAAGGCCG TCCCTCGCTT
GTCAGCGGCG GCCCGGGATG CGGGAAAACA CTTTTTGCTA TGGAGTTCAT CATCCGGGGG
ATCATCGATT ACGGTGAACC CGGTGTCTTT GTAGCGTTCG AGGAGAAGAT CGACGACCTG
AAGTTGAATT TCAGGTCAAT GGGATTTGAC CTCGACAACC TCATCCGCCG GAAGAAACTG
GTCCTCGATC ATATCACTAT CGATCGCTCC GAGATCGAGG AAGCCGGCGA GTACGATCTT
GAAGGGTTGT TCATCCGGCT TGGCGCACTC ATCGACGAGG TCGGCGCAAA GCGTGTTTCT
ATCGACACTC TGGAGGCCCT CTTCTCCGGT TTTGCAAACG AGGCAATCCT TCGGTCGGAG
CTGCGCCGGC TCTTCCTCTG GCTTAAAGAC CGTGGTGTTA CCGCCGTTGT CACGGGCGAG
CGCGGGGACC GTACAATCAC CACGTACGGC CTTGAAGAAT ATGTTGCAGA TTGCGTTATC
ACCCTTGACC ACCGGGTTAC AAACCAGATC GCGACCCGGC GCCTGCACAT TGTCAAGTAC
CGGGGAAGTA TCCACGGTAC TGACGAATAC CCGTTCCTGA TCAGTGAAGA CGGGATCTCC
GTTCTCCCTA TCACCTCGTT ATCCCTCACT CACAAGGCAT CGGGTGAGCG GATCTTTACC
GGCATTCCCC GGCTCGACAC GATGCTGGAG GGGAAAGGAT TCTACCGCGG GTCATCCATC
CTTATATCCG GGCAGGCGGG GACCGGCAAG ACAAGTATTG CCGCGACGTT TATCGATGCA
GCGTGCAGGC GGAACGAGAA ATGCCTCTTT TTTATCTTCG AAGAATCCGA GAGCCAGCTT
TTGCGGAACA TGAAGTCCAT CGGGATAAAC CTTGAACCAT GGGTCAAATC CGGTCTCCTG
AAGTTCCACG CGGTCCGGCC GACGGCGTAC AGCCTCGAGA TGCATCTCTC GGTGATGCTG
AAACTTATCG GGGAATTCAA ACCAAGGGTT GTGGCAGTCG ATCCCATTTC CAACCTCTAC
CCCATTGGAG ATGATATCCA GGTTCGCTCG ATGCTGATGC GTCTCATTGA CTTTGCCAAG
TCTCTCCAGA TAACCGGGCT CTTTACCAGC CTTTCGAACG ATGTGAATGT CGGGGTCTAT
TCGGTCGAGC CGACCGAGAT GCACGTATCT TCCCTGATGG ATGCGTGGCT CATCCTCAAG
AATATCGAAG GGAACGGGGA GCGGAACCGC GCGTTTTCCA TCATCAAGGT GCGGGGGATG
GCCCATTCAA ACCAGCTTCG CGAGTTTATC CTGTCGGACA AAGGCATCCG GCTTCTCGAT
GTGTACAAGG GCAGCGAGGG AGTCCTTTTC GGCTCCGCCC GTATAGCACA GGAGGGCAAT
GAAATCGACG ACCGGCTCTG CAAGAACGAG GAGATCGAAC GCAAGAAGCG GGAACTCGAA
AGCCGGCGGA AACTCATGGA AAACGAGATC TCTCTGCTCA GAGAGCGATT CGCACAGGAG
GAAGACGAGA TGATGATCCT TATCGGGCAG GACGTCTCCC GCGAGAAAGT AGCCGCAAAG
ACCAAAAGGG AGATCGCAAC CCAGCGGCAC GTCGACCGAT AA
|
|---|
| Protein sequence | MKKNKTAAIV GAAEIEKVHS GIKGLDDITG GGLPKGRPSL VSGGPGCGKT LFAMEFIIRG
IIDYGEPGVF VAFEEKIDDL KLNFRSMGFD LDNLIRRKKL VLDHITIDRS EIEEAGEYDL
EGLFIRLGAL IDEVGAKRVS IDTLEALFSG FANEAILRSE LRRLFLWLKD RGVTAVVTGE
RGDRTITTYG LEEYVADCVI TLDHRVTNQI ATRRLHIVKY RGSIHGTDEY PFLISEDGIS
VLPITSLSLT HKASGERIFT GIPRLDTMLE GKGFYRGSSI LISGQAGTGK TSIAATFIDA
ACRRNEKCLF FIFEESESQL LRNMKSIGIN LEPWVKSGLL KFHAVRPTAY SLEMHLSVML
KLIGEFKPRV VAVDPISNLY PIGDDIQVRS MLMRLIDFAK SLQITGLFTS LSNDVNVGVY
SVEPTEMHVS SLMDAWLILK NIEGNGERNR AFSIIKVRGM AHSNQLREFI LSDKGIRLLD
VYKGSEGVLF GSARIAQEGN EIDDRLCKNE EIERKKRELE SRRKLMENEI SLLRERFAQE
EDEMMILIGQ DVSREKVAAK TKREIATQRH VDR
|
|---|
| |