| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mboo_1443 |
|---|
| Symbol | |
|---|
| ID | 5411566 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Candidatus Methanoregula boonei 6A8 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009712 |
|---|
| Strand | + |
|---|
| Start bp | 1478985 |
|---|
| End bp | 1480664 |
|---|
| Gene Length | 1680 bp |
|---|
| Protein Length | 559 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 640868678 |
|---|
| Product | acetolactate synthase, large subunit, biosynthetic type |
|---|
| Protein accession | YP_001404604 |
|---|
| Protein GI | 154150986 |
|---|
| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0028] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] |
|---|
| TIGRFAM ID | [TIGR00118] acetolactate synthase, large subunit, biosynthetic type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.0306105 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.00417959 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAAGACCG GGGCAAAACT CCTTGTCGAA TCACTGCAGC GCGAGGGCGT CGATACACTG
TTCGGCTACC CTGGCGGATC AGTGCTGCCG ATCTATGATG AACTCTATGA TTCACCATTG
CGGCACATCC TGGTACGGCA TGAGCAGGCA GCTGCGCATG CCGCCGACGG GTATGCACGC
GCGAGCGGCC GCGTAGGGGT ATGCCTTGCC ACCTCCGGGC CCGGTGCCTG CAACCTGGTG
ACCGGTATCG CAACGGCCTA TATGGACTCG GTTCCCGTAG TCGCCATTAC CGGCCAGGTC
CCGACCACGA TGCTCGGGAA CGACGCGTTC CAGGAATCGG ACATCCAGGG CATCACGATG
CCGATTACCA AGCACAATTA CCTGGTAAAA GAGACTTCAG ACATTCCCCG CGTGGTGCAG
GAAGCATTCT ACATTGCAGG TACCGGGCGG CAGGGGCCGG TTCTCATCGA TCTCCCCAAG
GATGTCAACA CCCGATCGGT AAAAGAGCCG ATAGTCCCGG AGAAAGTGGT GCTCCGGGGC
TACAACCCGA CCTATAAAGG GCACAAACGA CAGATCGACA AGGCCATCGA GCTCATCACG
ACAGCGGAAC GGCCGCTCAT CTACGCGGGC GGCGGGGTGA TCTCATCCAA TGCCTCACCG
GAGCTTGTGG CCTTTGCCTC CACTCATGGA ATACCGGTAA CAACAACCCT CATGGGTATC
GGGTGCATTC CCTGTGACCA CCCGCTCAAC ATGGGGATGC TGGGAATGCA CGGCACCGAG
TACGCAAACT TCGCGGTCAC CGAGTGCGAT CTTTTGATCG CCATCGGGGC CCGGTTTGAT
GACAGGGTCA CTGGAAAGAT CGATACTTTT GCACCGAACG CGAAAGTGAT TCATATCGAT
ATCGATCCGG CCGAGATCGG GAAGAACAAG CGCGTGGATG TTCCGATTGT TGGAGACACA
AAAGCAGTAC TTACCGATAT CATAGCAGGT CTTGCCAAAA AGAATGCAAG CGAAGCATGG
CAGAAGCGGA TAAAGCACTG GAAGCAGAAC CACCCCCTCC GGTACGGGAA GGACAACGGC
TGCCTTCACC CTCAGTTCAT CCTCCAGCAG ATGAACGAGC TCCTGAAAGG CGATGCTGTG
ATCGTCTCTG AAGTGGGCCA GAACCAGATG TGGACCGCCC AATACTTCTG CTTCCGCCAT
CCCCGAACCT GGATCACATC TGGCGGCCTT GGCACAATGG GCTACGGCTT CCCTGCAGCA
ATCGGCGCAC ATTTTGCCCG GCCCGATGTG CCGGTCTTTG ATGTGGCGGG CGATGGGAGC
ATCCAGATGA ACATCCAGGA AATGGGAACG GTTGCGCAGT ACAATATCCC GGTGAAAATC
GCGATCCTCA ACAACATGTA CCTCGGGATG GTACGCCAGT GGCAGGAGCT CTTCTACGAC
CGGCGTTATG CTTACACTGA GCTCCCACCG GTAGAATTTG TCAGGATCGG ACAGGCATAT
GGGATCGAAG GGATCAAGGT GGAATCCTGC GACGAAGTGA TGCCGGCGCT CAAAGCTGCT
GTGGACCATG ACGGGCCGTT TGTGCTGGAC TTCCGGATCG AGCGTGAGGA AAATGTCTTC
CCTATGGTGC CGGCCGGGGC TGCCATCAAC GAGATGATCG GGGGGCATCC TCCATCATGA
|
|---|
| Protein sequence | MKTGAKLLVE SLQREGVDTL FGYPGGSVLP IYDELYDSPL RHILVRHEQA AAHAADGYAR
ASGRVGVCLA TSGPGACNLV TGIATAYMDS VPVVAITGQV PTTMLGNDAF QESDIQGITM
PITKHNYLVK ETSDIPRVVQ EAFYIAGTGR QGPVLIDLPK DVNTRSVKEP IVPEKVVLRG
YNPTYKGHKR QIDKAIELIT TAERPLIYAG GGVISSNASP ELVAFASTHG IPVTTTLMGI
GCIPCDHPLN MGMLGMHGTE YANFAVTECD LLIAIGARFD DRVTGKIDTF APNAKVIHID
IDPAEIGKNK RVDVPIVGDT KAVLTDIIAG LAKKNASEAW QKRIKHWKQN HPLRYGKDNG
CLHPQFILQQ MNELLKGDAV IVSEVGQNQM WTAQYFCFRH PRTWITSGGL GTMGYGFPAA
IGAHFARPDV PVFDVAGDGS IQMNIQEMGT VAQYNIPVKI AILNNMYLGM VRQWQELFYD
RRYAYTELPP VEFVRIGQAY GIEGIKVESC DEVMPALKAA VDHDGPFVLD FRIEREENVF
PMVPAGAAIN EMIGGHPPS
|
|---|
| |