| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mboo_1423 |
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| Symbol | |
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| ID | 5412025 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Candidatus Methanoregula boonei 6A8 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009712 |
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| Strand | - |
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| Start bp | 1453909 |
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| End bp | 1457994 |
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| Gene Length | 4086 bp |
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| Protein Length | 1361 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640868658 |
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| Product | PKD domain-containing protein |
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| Protein accession | YP_001404584 |
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| Protein GI | 154150966 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG3291] FOG: PKD repeat |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.446395 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.00318568 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAATATG CAAAAGCGAC AATAACTGCA ATAATTGTCA CTATCGCATT ATTAAACATT
GGGGGTTTAG CATACGCCGA TGATATCGCA CTTTCTCCCA ATCAATCCGT CTTCGGTGAG
ATCAGTTTCA ATACCACAAT TCCTTCGTCC CCATCGGAGA TTCCCATTAT TGCCTCAACA
ACGAATACGG GAGATATCAT ACAATCCTGG AGCCCGGATC TGATGCAGGA ACAGCAGAAT
GTGACTTCTG AAGCGGATGC TCCACAGGCT GCGATGGCTG TATTAAATGA AAATGGTGGA
GTACCGAGTG GAGCCGTTTT ATCTTATGTC AAAACAGTGT ATCTTACCGG GTATAACATA
CAAACAGGAC AGACAACCAG CCAGACGCCG CTCCTCACCC AGGTCGCATA CTCTCGTGAA
ATAAACGGAA TGCCGGTTGG TGGCCCGGGA GGGATTATTG ATATCTCTCT TGGGGAAAAC
GGTGAAAATC TCGGTCTGTT AAAGGTATGG AGAACCGCAA CACCAGTGGG TTCCCAAAAA
GTCATTACAG CAGATGAGGC TATCGATAAA TTGCTGAATG GAGAATTGAT CCAGACCCCT
CAGGATCCGG TTAATGTAAC TATAAACAAC ATCTCACTTG GATATTATGA AACGGGAGCA
AGTGATCAAC AGGATTACTT CGAACCGGTG TGGATTTTTT ATGCCAATAC GTCATCAGGG
GATCCCATCG ATTTTTACGT TTATGCCCGG CACTTCGCCA ACTTTACTGC AGAGCCAACA
AATGTTTCCA TGTGGCAGGC TGTGAACTTC ACTGACACCT CGGATACCAA CACAACGCAA
TGGTACTGGG ACTTTGGCGA CGGGACTAAT TCGACATTGG AGAATCCCGA GCACATATAC
TCAGCACCGG GTAATTACAC GGTGAATCTT ACTGCATGGA ACGACATTTC AAGCGATACC
CTATCAAAAC CGGATTTAAT CAGCGTTTCC TATAAGAAAC CCCTCAATTC CAACTTCACT
GCAAGCCCCA CCAATGCCTC TATTGGAGAT ACCATATCGT TCACTGACTC CTCCGACGCA
TTGCCAACAC AATGGTACTG GGACTTTGGG GATGGTACCA ACTCGACGTT AGAAAACCCC
ACGCATGCCT ATGAATCCGG CGGATACTAT ACAGTTAACC TCACCGCCGG GAATAGTTTC
GGGAACGACA CCCTCTCCCG GTTGAATTAT ATCTATATCT ATCCGTACCC GACCCCGGTT
GCGGGGTTCG TATCAAATTA TACCTCCCAG AACAGATTTA CCCCACTTGC TGTGGCCTTT
AATGATACCT CCAGTGGAAA TATCACCGCT TGGAGTTGGG ATTTCGGAGA CGGAACAAAT
TCTGCTGATC AGAATCCCAT TCACATCTTC AACGTATCTC CGGGAACTTT ATTCGGATCT
TATACCGTAA ACCTCACAGT CACCGATGAT TTCGGAAGAT CGTCAGCATA TCAGGATTAC
ATCCATGTCA AACAGGCATT ATCACCGGAT TTCACGGCAG AACCAGTCAG CGGCCCAGTG
CCGCTAAACG TCACATTCAC CGACATCACG CCGAACGGGA ATCTCGCATC AGGCAATGAA
TGGGATTTTG GGGATGGAAA CGATACCGGT GAACTAAATC CGTCGGTAAC CACAATTTCG
CATGAATACG ACTCGCCAGG AACTTATAAT GTAACACTGT ACTATTATGT CAACGAACCA
TTCTTCACTT CCGTGGTCAA GGGAATCCAT CCCAATAATA TTGGAGGATG GCTTGATACA
TATTCCACCA CCAAGACATA CTGCATCAAT GTCACTTCAC CGCAGTCACC AATAGCGGAT
TTCACTGCCA ACGTTACTAC GGGAAAGGAA CCGCTTACCG TCTCGTTTAA CGATACTTCG
ACGGGTTTCC CGACATCATG GAACTGGACC TTTGGCGATT CCGGAAACTC TACTGATCAA
AATCCTGTCT ATACCTACCA GAATGCAGGC ACGTACTCCG TTTCATTGAT CGTGGTAAAT
GATAATGGCC GCAACTCAAC AACGAAAACC GATTATATTT CGGTTCTTCC ACGCGCGTCC
CCGGCAGCTA ATTTCACGGC AAATGTCACG ACGGGGACAG CACCTCTTGC GGTTGCATTC
ACAGATACTT CAACCAATAA TCCAACCGGG TGGAACTGGA CCTTTGGGGA TGGCGCCTTA
TCGGATCAAC AAAATCCCAC CCATGTTTAT TCAGAACCCG GAAACTATTC AGTTAATCTC
CAGGTGATCA ACGCAGATGG TACAAACAGC CTGCTCAAGA CCGATTACGT CTCGGTCTAT
CTTACAGAAA CCGTCGTAAC ATTGCAGCCT GCGCCGCCAA ATCCCCCTCT CGCCAACTTC
ACTGCTAATG TCACCCAGGG AAAGACGCCG CTGGGTGTTG CATTCATGGA TACTTCGACC
GGGTTCCCCG CCAACTGGAC CTGGGACTTC GGTGATGGGA CAAGTGCCAT AACTCAAAAC
CCGGCCCACC TCTACAGTAC CGCAGGTTCA TACAATGTTT CATTGACTGC ATCGAACGTA
TATGGGAGTA ACCAGACCCT CAGGATCGGT TACATTACTG TACTTCCACG CACGCCCCCA
GTTGCAAATT TCACGGCGAA CGTAACTTCA GGATATGTAC CTCTTGGTGT ATTATTTACT
GATTTATCCA CTAATTCGCC AACCAGTTGG TACTGGGACT TTGGCGACGG GACAAATGCA
ACCACCCAGA ACCCAACCCA TGCGTATACG GCAGCAGGAT CTTATTCCGT CTCCTTGAAA
GTCGCTAATC CTGATGGAAA TAACACTACC ATCAGATCGA ATTACATTTC GGTCTCGGCC
ATTGCATCAT CCCCTGTTGC TAATTTTACC GCAAAGCCAA CTTGCGGGAA TGCACCACTG
AGTGTAGTGT TCAATGATAC TTCAACCGGT TCTCCGACAA GCTGGAACTG GAATTTCGGC
GATGGGACTA ATGCCACAAC CCAAAACCCG GTTCATATCT ACACTTCTTC CGGAAAATAC
AACGTATCTC TGACCGTGTC AAATGCCGGG GGAAGCAATA CTCTGACCCG ACAGAATTAC
GTAACCGTGA GTGGCGGATC GTTAAAATCA CCTACTGCAA ACTTTGAAGG AATACCCACC
TGCGGAAAAA CACCGCTCAC TGTGACCTTT GCGGATTTGT CAACCGGTTC CCCGACCAGT
TGGTACTGGA ATTTCGGTGA TGGAACCAAT GCCACAACCC AAAACCCGGT TCATACATAT
ACAACTCCGG GAAAGTATAC GGTCTCCTTG AAAGTAACGA ATGCCGCAGG AAGTGATACG
AAAGTACGGC AGGACTATGT TTCTGTCAGC AGCTCCAAAC CCGTTGTCGC TGATTTCAGT
GGTACACCAA CGTATGGGAA ATCTCCCCTC AGGGTATTAT TCACTGACCA ATCAACCGGT
TCCCCGACCA GTTGGTACTG GAATTTCGGT GATGGAACCA ATGCGACCAC TCAAAACCCG
GTGCACACCT ATACAATAGC GGGGAGATTT ACGATCTCTC TGACAGCAGG TAATCCAAAG
GGAAATTCGA CAAAAACCCG GGTGGATTAT ATCTCGGTCT CTTCAGGGGG ATGGTCAACA
CCAACCATAA CACCCACACA GACCTGTACG ATTGTCCCGC CGCACCCGTG CACCAAAATT
TCTGAATCTA TCGAAGACAA CAAAGTCCGG CTTACCTGGG ATCGGATTTC AGATCCTCAA
CTTCGAAGTT ATTATGTGGT AATTTCGAAG AATAACCCTA ACCCCAGCTA TCCCGATGAC
GGATACGTGA CAGGGACCAT TGATCCGGGT ACGAATTTCA CGGACATTGA TACAACAATG
CTCTATCATG GCGGGGACTT TGGAGGCCAT CTGATACCCG GGGAAAAATA TTATTTCAGT
GTTGCGTCAG TATACAATGA CAATACGGTA GTACCGGGAA ATCCTGTCCT GCTGACTTGG
CCGGATTCCG CAAAATATTT TACCGGGAAT GACTCTGCTA AACAAGGGAT CGGTGGATCG
CAATAA
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| Protein sequence | MKYAKATITA IIVTIALLNI GGLAYADDIA LSPNQSVFGE ISFNTTIPSS PSEIPIIAST
TNTGDIIQSW SPDLMQEQQN VTSEADAPQA AMAVLNENGG VPSGAVLSYV KTVYLTGYNI
QTGQTTSQTP LLTQVAYSRE INGMPVGGPG GIIDISLGEN GENLGLLKVW RTATPVGSQK
VITADEAIDK LLNGELIQTP QDPVNVTINN ISLGYYETGA SDQQDYFEPV WIFYANTSSG
DPIDFYVYAR HFANFTAEPT NVSMWQAVNF TDTSDTNTTQ WYWDFGDGTN STLENPEHIY
SAPGNYTVNL TAWNDISSDT LSKPDLISVS YKKPLNSNFT ASPTNASIGD TISFTDSSDA
LPTQWYWDFG DGTNSTLENP THAYESGGYY TVNLTAGNSF GNDTLSRLNY IYIYPYPTPV
AGFVSNYTSQ NRFTPLAVAF NDTSSGNITA WSWDFGDGTN SADQNPIHIF NVSPGTLFGS
YTVNLTVTDD FGRSSAYQDY IHVKQALSPD FTAEPVSGPV PLNVTFTDIT PNGNLASGNE
WDFGDGNDTG ELNPSVTTIS HEYDSPGTYN VTLYYYVNEP FFTSVVKGIH PNNIGGWLDT
YSTTKTYCIN VTSPQSPIAD FTANVTTGKE PLTVSFNDTS TGFPTSWNWT FGDSGNSTDQ
NPVYTYQNAG TYSVSLIVVN DNGRNSTTKT DYISVLPRAS PAANFTANVT TGTAPLAVAF
TDTSTNNPTG WNWTFGDGAL SDQQNPTHVY SEPGNYSVNL QVINADGTNS LLKTDYVSVY
LTETVVTLQP APPNPPLANF TANVTQGKTP LGVAFMDTST GFPANWTWDF GDGTSAITQN
PAHLYSTAGS YNVSLTASNV YGSNQTLRIG YITVLPRTPP VANFTANVTS GYVPLGVLFT
DLSTNSPTSW YWDFGDGTNA TTQNPTHAYT AAGSYSVSLK VANPDGNNTT IRSNYISVSA
IASSPVANFT AKPTCGNAPL SVVFNDTSTG SPTSWNWNFG DGTNATTQNP VHIYTSSGKY
NVSLTVSNAG GSNTLTRQNY VTVSGGSLKS PTANFEGIPT CGKTPLTVTF ADLSTGSPTS
WYWNFGDGTN ATTQNPVHTY TTPGKYTVSL KVTNAAGSDT KVRQDYVSVS SSKPVVADFS
GTPTYGKSPL RVLFTDQSTG SPTSWYWNFG DGTNATTQNP VHTYTIAGRF TISLTAGNPK
GNSTKTRVDY ISVSSGGWST PTITPTQTCT IVPPHPCTKI SESIEDNKVR LTWDRISDPQ
LRSYYVVISK NNPNPSYPDD GYVTGTIDPG TNFTDIDTTM LYHGGDFGGH LIPGEKYYFS
VASVYNDNTV VPGNPVLLTW PDSAKYFTGN DSAKQGIGGS Q
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