| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mboo_1396 |
|---|
| Symbol | |
|---|
| ID | 5410958 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Candidatus Methanoregula boonei 6A8 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009712 |
|---|
| Strand | + |
|---|
| Start bp | 1427783 |
|---|
| End bp | 1428724 |
|---|
| Gene Length | 942 bp |
|---|
| Protein Length | 313 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 640868629 |
|---|
| Product | dihydrodipicolinate synthase |
|---|
| Protein accession | YP_001404557 |
|---|
| Protein GI | 154150939 |
|---|
| COG category | [E] Amino acid transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0329] Dihydrodipicolinate synthase/N-acetylneuraminate lyase |
|---|
| TIGRFAM ID | [TIGR00674] dihydrodipicolinate synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.158147 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 0.212421 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTTGAAG GTGTCCTTCC CGCTATTATC ACTCCTTTTC GGCGCAATTC CGCGACGAGC
CTGGATATCC CGGGGCTTGA GCGGAATATC AGTTACCTCC TTTCCTGTGG CATCCACGGA
ATTGTCCCCT GCGGCTCGAC CGGTGAGTCG GCAACGCTCT CGTTTGCCGA GCATGAAAAG
GTCGTAAGCA CTACCATCGA CAAGGTCAAC GGCAAGGTGC CCGTCCTTGC GGGAACGGGC
TCAAACAACA CCGCAGAAGC AGTCATCCTC ACCAAGGCGG CAAAGGACAC CGGTGCCAAT
GGCGTGCTCG TTATCAGCCC ATATTACAAC AAGCCCAACC GGGCTGGCCT TATAAAGCAT
TACACGAAGC TTGCGGACCT TGATATTCCC GTGGTCATCT ACAATGTTCC CGGCCGCACG
GGCCAGAATC TGGAACCCGA CCTGATCGCG GAACTTGCAA AACATCCCAG TATTGTCGGG
ATCAAGGAGG CAAGCGGCAA CATCGGCCAG GTCTCCCGGA TTATCGAAAT GACACAGGAC
GAGGACTTTA CGGTTACCTC CGGTGACGAT AACCTTACCC TCCCGATCAT GGCGCTGGGC
GGAAAAGGCG TGATCTCGGT GGCCGCAAAC GTGGACCCCA CACGAATGGT TGCTCTCTAC
GAAGCGGCAA AAAAAGGTAA CTGGGATAAA GCGCTTGCCC TGCATTACGC CCTCTCCCCG
GTCTTCCGGG CAATGTTCGT TGATACCAAC CCGATACCTG TCAAGAAAGC GGTGGAGCTG
ATGGGCATGG CAGGCGGCCC GGTCCGGCTC CCTCTCGATG ATCTGGACGA GAAAAAGACG
GCGGATCTCA AAAAGATTCT TGCCGCTATC CCGACAGCAA AAACGGCGGC CGCGCAGAAG
AATCCCGCAA AGAAAACTGA GGTAAAACGC AGCCGGAGGT GA
|
|---|
| Protein sequence | MFEGVLPAII TPFRRNSATS LDIPGLERNI SYLLSCGIHG IVPCGSTGES ATLSFAEHEK
VVSTTIDKVN GKVPVLAGTG SNNTAEAVIL TKAAKDTGAN GVLVISPYYN KPNRAGLIKH
YTKLADLDIP VVIYNVPGRT GQNLEPDLIA ELAKHPSIVG IKEASGNIGQ VSRIIEMTQD
EDFTVTSGDD NLTLPIMALG GKGVISVAAN VDPTRMVALY EAAKKGNWDK ALALHYALSP
VFRAMFVDTN PIPVKKAVEL MGMAGGPVRL PLDDLDEKKT ADLKKILAAI PTAKTAAAQK
NPAKKTEVKR SRR
|
|---|
| |