| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mboo_1248 |
|---|
| Symbol | |
|---|
| ID | 5412077 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Candidatus Methanoregula boonei 6A8 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009712 |
|---|
| Strand | - |
|---|
| Start bp | 1269096 |
|---|
| End bp | 1272041 |
|---|
| Gene Length | 2946 bp |
|---|
| Protein Length | 981 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 640868476 |
|---|
| Product | methyl-accepting chemotaxis sensory transducer |
|---|
| Protein accession | YP_001404409 |
|---|
| Protein GI | 154150791 |
|---|
| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.206477 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 39 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGTTTA TTGATGAAAT GAAACTGGGA AAAGAGTTCA ACACATTGCT TGTCGATATA
GAGCACATGT CGGACGCGCA CGACAAAGGG GATATTGATG TACTTATACC GGTCGAAAAG
TACCAGGGTT CGGCAAAGAC CGCGGCCCAG TGTATCAACA ACATGGTTAA CGGGCACATC
ACGGTAAAGA AGAAGGCTAT GGCAACTGTT GCCGAGTTTG CCAAGGGCAA CTTCGAAGCA
CCGCTGGAGA AATTCCCGGG CAAGAAGGCG TTTATCAACG ACAATATCGA ACTCCTGCGC
ACGAATCTCA AGGCCCTTGT CGCAGATGCG AACATGCTCA GCAAGGCCGC AGTCGAGGGC
AAACTTGATA CCCGTGCTGA TGCATCCAAA CACCAGGGAG ACTACCACAA GATTGTCCAG
GGCGTCAACG ATACACTTGA CTCGGTCATC GGCCCGCTCA ATGTAGCAGC GGAGTATGTT
GACCGGATCA GCAAGGGAGA TGTCCCGGCC AAGATCACCG ACAATTACAA CGGTGACTTC
AACGAGATCA AGAACAATCT CAACCAGTGT ATTGACGCAG TCAACCTCCT GGTAAAGGAT
GCAAACCTGC TCAGCAAGGC CGCAGTCGAG GGTAAGCTCG ATACCCGTGC TGATGCATCC
AAACATGAAG GCGACTTCAG GAAGATCGTT GAGGGCGTTA ACCAGACCCT TGACTCGGTC
ATCGGCCCGC TCAACGTTGC CGCAGAGTAT GTAGACCGGA TCAGCAAGGG AGATGTCCCG
GCCAAGATCA CCGACAATTA CAACGGTGAC TTCAACGAGA TCAAGAACAA TCTCAACCAG
TGTATTGACG CAGTCAACCT CCTTGTTGCA GATGCAAACA TGCTCAGCAG GGCAGCAGTT
GAAGGTAAAC TCGATACCCG TGCTGATGCA TCCAAACACC AGGGCGACTT TAGGAAGATT
GTCCAGGGTG TTGACGACTG TCTTGACGCA GTGATCGGCC CGCTCAACGT TGCCGCAGAG
TATGTAGACC GGATCAGCAA GGGAGATGTC CCGGCCAAGA TCACGGACAA CTACAACGGC
GACTTCAACG AGATCAAGAA CAACCTCAAC CAGTGTATCG ACGCAGTCAA CCTCCTGGTC
CAGGAAGCAA ATATGCTCAG CAAGGCAGCA ATTGAGGGCA AGCTCTCCAC CCGTGCTGAC
GCATCCAAAC ACCAGGGTGA CTTCAGGAAG ATCGTCCAGG GTGTTGATGA CTGCCTGGAT
GCCGTTATCG GTCCGCTCAA CGTAGCTGCC GATTATGTAG ACAAGATCTC CAAGGGCAAC
ATCCCGTCAA GGATTACTGA CAACTACAAC GGCGACTTCA ACGTTATCAA AAACAACCTC
AACCAGTGCA TTGACGCTGT CAATCTCCTG GTCCAGGACG CAAACATGCT CAGTAAGGCG
GCAGTTGAAG GCAAACTCGA TACCCGCGCT GATGCATCCC GACACCAGGG TGATTTCAGG
AAGATTGTCC AGGGTGTTGA TGACTGCCTT GACTCGGTCA TCGGTCCGCT CAATGTAGCT
GCTGATTATG TAGACAAGAT CTCCAAAGGC AACATCCCGG CAAGGATCAC TGACAACTAC
AACGGCGACT TCAACGTTAT CAAAAACAAC CTCAACCAGT GCATTGACGC TGTCAATCTC
CTGGTTAAAG ATGCAAACAT GCTCTCGGAA GCAGCGGTTG CAGGAAAACT CGGGACCCGT
GCCGATGCAT CCAAGCACCA GGGTGACTTT AAGAAGATCG TTGACGGTGT TAACGACACG
CTCGATGCAG TCATCGACCC AGTAAACGAG GCCATGCGCA TCTCAGATGA GTACGCAAAG
CAGAACTTTA CCGCCCGCGT AAACGAGGAC CTCCAGGTCC GCGGGGACTT TATCCGGTTC
AAGAAATCCC TCAATAACGT GGGTATCCAG GTTTCTTCGG CACTCAGCAA GGTCAATGAC
CGTGTCAACG AACTTTCAGC GAGCGCCCAG GAAGCCAGCG CAAGCGCAGA GGAGGTCTCT
GCCGGTTCAA ACCAGGTGGC AAAGAACGCC GGTGCAGTCA GCTCGAATGC AGACAAGAGC
GGGGAAGGAA TCAAGCAGGT ACTCAAGGCA ATGGAAGACC TCTCAAACAC GGTCCAGGAA
GTTGCCTCCC GTGCTGATGC AGTTGCCCAG CTTGCCAAAC AGTCAGAAGA ACTTTCCCGG
AAAGGTACCG ATCTCGCAAA TAAGGCAGAC CGGGGAATGG ACGGCATCAC CAAGTCCTCC
GCAGAGGTTA ACACGATTAT CCTTGATATC AAGTCCCAGA TGGACAAGAT CGGGGACATC
GTGGTCCTGA TTGCAAACCT GGCAAACCAG ACCAATCTCC TTGCCCTCAA CGCGGCAATC
GAAGCAGCCC GCGCCGGTGA AGCAGGCCGC GGATTTGCGG TCGTCGCCAC CGAGGTCAAG
TCGCTTGCCG AGGAGTCGGA GAACTCCGCA GAGAAGATCC GCCAGATGAT CGGTGAGCTC
CAGAAGCAGA CCCAGCGTGC AGTTGAGGCC GTGGAATCTG CAAATGATGG TGTCAGGGAA
GGCAGCGGCG CCCTTACCCA GACCCTCGAG GTATTCAACA AGATTGTCAC CTCGATCGAC
GACATCAACA AGAACATTTC AAGCGTAGCT GCATCCGCAG AAGAGCAGGC CGCATCAGTC
GAAGAAGTTA CTGCCAGTGT CACAACCGTA AGCACCTTGA TCAGTGAGAC CGCAAAAGAG
GCAACCGACG CAGCTGCAGC AACCGAAGAG GCGTCCGCAT CCATCGACCA GATCACCAAA
GTCATCCAGA ACGTGAACAC CATTGTCGAG GATGTCAGTC ACGAGATCGC AGGGTTTAAG
GTCGATGCAT CGGTACGGAT CAGCGCAGAC AGAGGCGCGG CATCGAACAC AGCGAGCGCC
CAGTAA
|
|---|
| Protein sequence | MTFIDEMKLG KEFNTLLVDI EHMSDAHDKG DIDVLIPVEK YQGSAKTAAQ CINNMVNGHI
TVKKKAMATV AEFAKGNFEA PLEKFPGKKA FINDNIELLR TNLKALVADA NMLSKAAVEG
KLDTRADASK HQGDYHKIVQ GVNDTLDSVI GPLNVAAEYV DRISKGDVPA KITDNYNGDF
NEIKNNLNQC IDAVNLLVKD ANLLSKAAVE GKLDTRADAS KHEGDFRKIV EGVNQTLDSV
IGPLNVAAEY VDRISKGDVP AKITDNYNGD FNEIKNNLNQ CIDAVNLLVA DANMLSRAAV
EGKLDTRADA SKHQGDFRKI VQGVDDCLDA VIGPLNVAAE YVDRISKGDV PAKITDNYNG
DFNEIKNNLN QCIDAVNLLV QEANMLSKAA IEGKLSTRAD ASKHQGDFRK IVQGVDDCLD
AVIGPLNVAA DYVDKISKGN IPSRITDNYN GDFNVIKNNL NQCIDAVNLL VQDANMLSKA
AVEGKLDTRA DASRHQGDFR KIVQGVDDCL DSVIGPLNVA ADYVDKISKG NIPARITDNY
NGDFNVIKNN LNQCIDAVNL LVKDANMLSE AAVAGKLGTR ADASKHQGDF KKIVDGVNDT
LDAVIDPVNE AMRISDEYAK QNFTARVNED LQVRGDFIRF KKSLNNVGIQ VSSALSKVND
RVNELSASAQ EASASAEEVS AGSNQVAKNA GAVSSNADKS GEGIKQVLKA MEDLSNTVQE
VASRADAVAQ LAKQSEELSR KGTDLANKAD RGMDGITKSS AEVNTIILDI KSQMDKIGDI
VVLIANLANQ TNLLALNAAI EAARAGEAGR GFAVVATEVK SLAEESENSA EKIRQMIGEL
QKQTQRAVEA VESANDGVRE GSGALTQTLE VFNKIVTSID DINKNISSVA ASAEEQAASV
EEVTASVTTV STLISETAKE ATDAAAATEE ASASIDQITK VIQNVNTIVE DVSHEIAGFK
VDASVRISAD RGAASNTASA Q
|
|---|
| |