| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mboo_1216 |
|---|
| Symbol | |
|---|
| ID | 5410388 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Candidatus Methanoregula boonei 6A8 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009712 |
|---|
| Strand | + |
|---|
| Start bp | 1235929 |
|---|
| End bp | 1238640 |
|---|
| Gene Length | 2712 bp |
|---|
| Protein Length | 903 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 640868443 |
|---|
| Product | DNA mismatch repair protein MutS |
|---|
| Protein accession | YP_001404377 |
|---|
| Protein GI | 154150759 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0249] Mismatch repair ATPase (MutS family) |
|---|
| TIGRFAM ID | [TIGR01070] DNA mismatch repair protein MutS |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.0405457 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGACTG AGCCTTCTCT CGGCACCGGC CCGGCAGCCG ATGATGGCAG AACCCTTACG
CCCGGGATGC GGCAGTACCG GGAGATCAAG GCGCAGTACC CCGATGCAAT TCTCTTTTTC
CATATAGGGG ACTTTTTTGA GACGCTGGAA GGCGATGCGG AGATCGTGTC AAAGGAGCTC
GATCTTGTAC TTACCTCACG GTCCAAGAAT GGCGACCAGC GTATACCGCT TGCCGGGGTT
CCCCATCATG CCGGTGAGGG ATACATCGCC CGCCTCGTGG CAAAAGGGTA CAAGGTTGCC
ATCTGCGAAC AGACCGAGGA CCCGAAAACA GCAAAGGGCC TGGTAAAACG CGAGGTGGTC
CGGGTGATCA CGCCCGGTAC AGTAATTGAT CCGGTAATGC TCCCCTCATC GGCTGCTGCG
TACCTGATGG CGGTCTCTCC CGGCACAAAA GGTGCGGATT GGGGCATCGC GCTCCTGGAC
ATCTCCACCG GTGAATTTTT TGTCCTTGCA ATTCCGGCGG AAGGGAGTAC CGGGAACCTC
CGGTCCGAGA TTGCCCGGTA CCGCCCGGCG GAGTGTATCG TCCCCTCATC CGTGGACGAA
GAACTGCGTA CCTCGCTGCG GCGTGACGGT GTGGTGGTGA CGCCTTATGC CGATGACCGT
TTCCTTCCCG ACCGGGCCGG GCGCACCCTT TGCGAACACT TCGGTGTCGC CTCCCTTGCC
GGGTATGGCT GTGAGGGAAT GCCGGCTGCG GTCTCAGCGG CCGGTGCAGC GCTCTCCTAC
GCGGCTGACA CCCAGAAGTC CACACTCCCT CATGTGAGTT CCCTTTTCAC GCGCTCATCA
GCACAGGGCA TGATGCTCGA TGCGATCACC CTGCGCAACC TCGAGGTGCA TGAGAGCATA
CGGGGCGGGA CAAAAGGGGC AACGCTCTTT TCCACCCTTG ACCGTACAAA GACCCCGATG
GGCAGCCGGT TTTTACGCTT GCATCTGACC CGGCCGCTCA CGGATATTGC CCGGATCAAT
GCACGGCTCG ATGCTGTCGA ATATTTCACT GCTTCAGCCA CACTGCGCAT GACCCTGCGC
GAGCTTCTTA CGCGCCATGC TGATATCGAG CGGATCACGG CACGAATCTC ATATGGGAAT
GCCGGTCCGC GGGATCTTGT TGCCCTTGCC GAAACGCTCG CCACCCTCCC CGAGATCCGG
AAACTGCTTG CCGGGCCTTC AGTGGGATCG GATAACAGCG CACCGGTTCC CCGGCGTGTT
GCTGCTGCCC GGGACTGCCT TTTCGATCTC CCGTCCATAA TCGATCTTAT CCGGAGAGCG
ATCACCGATG ATCCCCCGGC GATCGCAAAG AATGGCGGAG TTATCCGGTC CGGCTATTCG
GCAGAGCTCG ACGGGATGAC CGGTGTCCTG CACTCAGGGA AGAACTGGAT TGCAGAGCTC
CAGCAGCAGG AGCGCGAAAA GACCGGGATC AAATCCCTCA AGATCGGATA CAATCGGATC
TTCGGGTATT ACATTGATGT GAGCAAGAGC AATATTGCAC TCGTGCCGGC CCGGTACGAG
CGCCGGCAGA CCACGGCAAC CGGGGAACGG TACACCATTC CCGAACTCCG GGAAAAGGAG
GCCGTGATCA CGGATGCAGA TGAGCGCGTT CTTGCGCTTG AACGCTCGCT GTATGCCGGC
CTTATCGATG AGATCAGAAA GGAGATCCCC GCGCTCCAGA GCATTTCCCG CGGGATCGCA
ACGCTTGATG TTGCCGCTGC CCTTGCCGAT GCGGCCACGG ATTTCGATTA CGTCCGCCCC
CGGCCGGATA CCGGGGATGC GATTACCTGC CGGGATATCC GTCACCCTGT GGTGGAGCAA
AGCCTTGCCG GGGGTTTTGT CCCCAATGAT ACCGAGCTCT CCGGGTCAAA AAACCAGATC
ATGATCATCA CCGGCGCCAA CATGGCGGGC AAGTCCACCT ACATGCGCTC GGTGGCGCTC
TGCTGCATCA TGGCCCAGGC GGGAAGTTTT GTCCCGGCCC GGTCTGCCCA AATTGGGATC
ATCGACCGGA TCTTTACCCG TGTCGGGGCA TTTGACGATC TTGCAAGCGG CCAGAGTACC
TTCTTTGTCG AGATGCTCGA ACTGGCAAAT ATCCTCAACA ACATGACAGA AAAAAGTCTT
GTGATCCTTG ACGAGATCGG GCGTGGCACG AGCACGGCTG ACGGGTGCTC GATCGCGCAG
GCGGTACTCG AATACCTGCA TGGAAAATCC TCTGCCGGCC CAAAGACACT CTTTGCCACC
CACTTCCATG AACTCATTGG CATGGAAGCG GAGCTTAAGC GGGTAAAAAA TTACCATTTT
GCCGTGCAGG AGACTAAACA GGATGTAGTC TTCCTCCGGA AACTGATCCC CGGGGCAACC
GACAAGAGTT ACGGTATCCA TGTTGCACGG CTTGCGGGCA TCCCAAAAAA AGCAACTGAC
CGGGCCGAAG TCCACCTTTG CGAAACCCTC AAACGCGATG CTTCCGGTGG CTCAAAAGCA
CGGCGCTATA CCCAGCTCCT GCTGGCAGAC GACAACCTGC CGGCCCGGGC TGCTGCTGCT
CCGGATCCGG TAATTGCGGA GATTGCCGGA CTGGATCCTG ATTCCATGAC GCCAATGCAG
GCACTCTCAA AACTGGCAGA ACTCAAAAGT CGTGCAGGCA GGTCATGCAA CATGCCCGGG
AAGGATCTCT GA
|
|---|
| Protein sequence | MKTEPSLGTG PAADDGRTLT PGMRQYREIK AQYPDAILFF HIGDFFETLE GDAEIVSKEL
DLVLTSRSKN GDQRIPLAGV PHHAGEGYIA RLVAKGYKVA ICEQTEDPKT AKGLVKREVV
RVITPGTVID PVMLPSSAAA YLMAVSPGTK GADWGIALLD ISTGEFFVLA IPAEGSTGNL
RSEIARYRPA ECIVPSSVDE ELRTSLRRDG VVVTPYADDR FLPDRAGRTL CEHFGVASLA
GYGCEGMPAA VSAAGAALSY AADTQKSTLP HVSSLFTRSS AQGMMLDAIT LRNLEVHESI
RGGTKGATLF STLDRTKTPM GSRFLRLHLT RPLTDIARIN ARLDAVEYFT ASATLRMTLR
ELLTRHADIE RITARISYGN AGPRDLVALA ETLATLPEIR KLLAGPSVGS DNSAPVPRRV
AAARDCLFDL PSIIDLIRRA ITDDPPAIAK NGGVIRSGYS AELDGMTGVL HSGKNWIAEL
QQQEREKTGI KSLKIGYNRI FGYYIDVSKS NIALVPARYE RRQTTATGER YTIPELREKE
AVITDADERV LALERSLYAG LIDEIRKEIP ALQSISRGIA TLDVAAALAD AATDFDYVRP
RPDTGDAITC RDIRHPVVEQ SLAGGFVPND TELSGSKNQI MIITGANMAG KSTYMRSVAL
CCIMAQAGSF VPARSAQIGI IDRIFTRVGA FDDLASGQST FFVEMLELAN ILNNMTEKSL
VILDEIGRGT STADGCSIAQ AVLEYLHGKS SAGPKTLFAT HFHELIGMEA ELKRVKNYHF
AVQETKQDVV FLRKLIPGAT DKSYGIHVAR LAGIPKKATD RAEVHLCETL KRDASGGSKA
RRYTQLLLAD DNLPARAAAA PDPVIAEIAG LDPDSMTPMQ ALSKLAELKS RAGRSCNMPG
KDL
|
|---|
| |