| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mboo_1110 |
|---|
| Symbol | |
|---|
| ID | 5411270 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Candidatus Methanoregula boonei 6A8 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009712 |
|---|
| Strand | + |
|---|
| Start bp | 1109483 |
|---|
| End bp | 1110373 |
|---|
| Gene Length | 891 bp |
|---|
| Protein Length | 296 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 640868336 |
|---|
| Product | dihydroorotate dehydrogenase 1B |
|---|
| Protein accession | YP_001404271 |
|---|
| Protein GI | 154150653 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0167] Dihydroorotate dehydrogenase |
|---|
| TIGRFAM ID | [TIGR01037] dihydroorotate dehydrogenase (subfamily 1) family protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.229452 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 0.46967 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTCGTAC TCAGGACGGA ACCGGTGACG ATAGGCGGCG TGACCCTCAA TAACCATCTC
CTTCTTGCTG CCGGCGTTCT CGGGACAACC GGCGCATCGT TATCAAGGGT GCTTGCCTGC
GGTGCTGGTG GCGTAGTGAC AAAATCGATC GGCCCGCAGC CAAAAGACGG GCATGCTGGT
CCCTGTATCG CCCTGCTTGA CGACGGGATC CTCAATGCTA TGGGGCTCCC CAATCCCTCA
AGGGAATTTA CCGGGGAATT ATCGGGTCTT GGGAGTAAGC CGGTGATAGT AAGTATCTTT
GGCGGGGACC CGGAGGAATT TGCAGAAGTG GCCGGGTGGT TTAAGGGGAT GGCCGCCGGC
CTTGAGCTCA ATCTCTCCTG CCCCCATGCG GAAGGCTATG GGGCCTCTAT AGGTGTGAAC
CCGGATCTTG TGGAAAAATG CACGCGTGCA GTCAGTACTC TTGGTATGCC TACCTGGGTG
AAACTGACAC CGAATGTCAC GGATATAACG GCAATCGGAA AGGCAGCAGA GCGTGGGGGC
GCGTCGGCAA TTGTGGCCGT TAACACGGTA AAAGCCATGC GCATATCCAC TGCACTCCGG
CGGCCGGTGC TGGGAAACCG GTACGGCGGC CTTTCCGGGG AAGCCATATT CCCGGTGGCT
GTCCGCTGTG TCTATGAACT GTATGAAGCC TGTTCCCTCC CCATTATTGG GTGCGGCGGG
ATCTCTTCTG CCGATAACGT GATTGAGATG ATGATGGCAG GGGCCTGTGC CGTTGAGATT
GGCAGTGCCG TGCAGAAGCA TGACATCACC GTCTTTGAAA CCATAAAAAA CGACCTGTAC
GCAAAGAAAG GGATCGATCC CGCAGAGATC ATAGGGTGTG CCCATGGATG A
|
|---|
| Protein sequence | MVVLRTEPVT IGGVTLNNHL LLAAGVLGTT GASLSRVLAC GAGGVVTKSI GPQPKDGHAG
PCIALLDDGI LNAMGLPNPS REFTGELSGL GSKPVIVSIF GGDPEEFAEV AGWFKGMAAG
LELNLSCPHA EGYGASIGVN PDLVEKCTRA VSTLGMPTWV KLTPNVTDIT AIGKAAERGG
ASAIVAVNTV KAMRISTALR RPVLGNRYGG LSGEAIFPVA VRCVYELYEA CSLPIIGCGG
ISSADNVIEM MMAGACAVEI GSAVQKHDIT VFETIKNDLY AKKGIDPAEI IGCAHG
|
|---|
| |