| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mboo_0858 |
|---|
| Symbol | gatB |
|---|
| ID | 5411477 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Candidatus Methanoregula boonei 6A8 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009712 |
|---|
| Strand | + |
|---|
| Start bp | 834475 |
|---|
| End bp | 835923 |
|---|
| Gene Length | 1449 bp |
|---|
| Protein Length | 482 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 640868084 |
|---|
| Product | aspartyl/glutamyl-tRNA amidotransferase subunit B |
|---|
| Protein accession | YP_001404019 |
|---|
| Protein GI | 154150401 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0064] Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) |
|---|
| TIGRFAM ID | [TIGR00133] glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, B subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.746768 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 39 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCGATG CAGATGTGAT CGTTGGCCTT GAGGTCCACT GCCAGCTGGA TACAAAGAGC
AAGCTCTTCT GCGGCTGCTC CACGGATTAC CGGGACGATG GCCCCAACAC CCATGTCTGC
CCGATCTGCC TTGGCCTCCC GGGCACGATG CCGGCCTTAA ACAAGCGTGC AATCGAATAC
GCCATGAAAG TGGCAAAAGC GCTCAACTGC ACGATTGTCC CTGAGTCCGA GTTCTCGCGG
AAGAACTACT TCTACCCAGA CCTTGACAAA GCTTACCAGA TTACGCAGTA CGACAAGCCG
CTTGCACAGG GCGGATATGT CGAGATCGAG GGCGACGACG GGAAGGAGCG GAAGATCCAG
CTCACCCGCA TCCACGTGGA GGAGGACCCG GGCCGGCTCG TGCACATGGG AAATGCCGAA
CGCGGGCGGT ACTCCCTTGT GGATTACAAC CGTGCCGGCA TCCCGCTCAT CGAGATTGTC
TCCGAGCCGG ACATGCGCTC GCCAAAGGAG GCAAGGAAAT TCCTCAACAA GCTCCGCGCC
ACGCTCGAAT ACCTTGGCGT CTTTGATTCG GAAAAGGAGG GATCGCTGCG TGTCGATGCA
AACATCTCTC TGCGGGGAAA CGAGCGCGTG GAAGTCAAGA ACATCACCTC CTATAAAGGA
GTGGAAAAGG CGCTCACCTT CGAAGTGACC CGGCAAAAGA ACCTGATCCG GCGCGGCCTT
CCCGTGGAAC GCGAGACCCG GCACTACCTT GAGGCCCGGG GGATCACCCA GTCGGCCCGC
TCCAAGGAGA CGGAGAACGA TTACCGGTAC TTCCCCGAGC CCGACCTCCG GCCCCTCCGG
GTCCAGTCAT GGGTAAAGGA TATCGCGCTC CCCGAGCTTC CGGATGCCCG GCGCGAACGG
TTCGTTACCC AGTACAGCTG CTCGCTGAAC CATGCCCGGA CCCTGACCGG CGAACTCAAA
ATGGCCAACT TCTTTGAGGG CGTGGTTTCC GGCGACCGGG CGGGGCTGTG CAGCCTTGCG
GCCACGTGGA TTGCCGACAC TCTTGCCGGG GAACTTAACT ACCGGAACAT GGGGATCGAC
TGTGTAGACC CGCACCGCTT CGGCAGCCTG CTTGCCATTC TCAGGGCCGG AACCATCACG
GATAAAAGCG GTGTCGAAGT CCTCCGGGTC ATGCTCGATG AGCAGCTCAA AGGAGAGACC
GTGGAGACGC CCGAAGCGAT CGTAGCACGG CTCAACCTTG CAAAGACTGC CGGGGATGAC
GGGGCCCTTG CCGCTGCGGT AAAAGAAGTA ATAAGCGAAA ATCCAAAAGC AATCGAGGAT
TACAAGGCCG GAAAGAACGG GGCGATAAAC TTCCTTGTCG GCCAGGTAAT GAAAAAGACC
CGGGGCCGCG CCGATCCCGG AGAACTCAAC CGTCTGGTAG TCGCGGCCCT GAAGGATGGG
GGACAGTGA
|
|---|
| Protein sequence | MIDADVIVGL EVHCQLDTKS KLFCGCSTDY RDDGPNTHVC PICLGLPGTM PALNKRAIEY
AMKVAKALNC TIVPESEFSR KNYFYPDLDK AYQITQYDKP LAQGGYVEIE GDDGKERKIQ
LTRIHVEEDP GRLVHMGNAE RGRYSLVDYN RAGIPLIEIV SEPDMRSPKE ARKFLNKLRA
TLEYLGVFDS EKEGSLRVDA NISLRGNERV EVKNITSYKG VEKALTFEVT RQKNLIRRGL
PVERETRHYL EARGITQSAR SKETENDYRY FPEPDLRPLR VQSWVKDIAL PELPDARRER
FVTQYSCSLN HARTLTGELK MANFFEGVVS GDRAGLCSLA ATWIADTLAG ELNYRNMGID
CVDPHRFGSL LAILRAGTIT DKSGVEVLRV MLDEQLKGET VETPEAIVAR LNLAKTAGDD
GALAAAVKEV ISENPKAIED YKAGKNGAIN FLVGQVMKKT RGRADPGELN RLVVAALKDG
GQ
|
|---|
| |