| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mboo_0722 |
|---|
| Symbol | |
|---|
| ID | 5410007 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Candidatus Methanoregula boonei 6A8 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009712 |
|---|
| Strand | + |
|---|
| Start bp | 689909 |
|---|
| End bp | 690829 |
|---|
| Gene Length | 921 bp |
|---|
| Protein Length | 306 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 640867942 |
|---|
| Product | phage integrase family protein |
|---|
| Protein accession | YP_001403883 |
|---|
| Protein GI | 154150265 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG4974] Site-specific recombinase XerD |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 0.0599364 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGGAGCG GGTATTTTTC TGACTGGCTC AAAAGCTACC GGAATTACCT GCGTATGCGC
AACTATTCCT CCCGAACCCT GGACAGCTAC GAACAGGTCA TCCGGCATTT TGGATATTAT
GTCTGGCTCC GCCGGCATAC TGAAGTGACT AAACTTGTCT TCTTCTGGAA AGATCTGGAA
AATGCCCGGC TTGACACCAG CGTTGATGTC CCGCCGTCCA TGATCACGGA TTTTCTCTCG
TTTGTCTCGA CCATGCGCAC GTATAAACCC AAGACCTTTC ACCGGATCAT CTCCACCCTC
AGCTCCTTTT ACCGTTTCCT CTCGGTTCAG GGGGCAGTAG TTGCAAATCC GTTGGCAGGA
ATTGAACGCC CGCGAATCAA GCAGCAGGAG GTAAAATATC TCAAGCATAA TCAGGTGCTC
CGTCTGATCG ATTCGATTGA GGATCCCAGG GACAAACTGA TTGTCAGGAC CATCTATTCC
ACGGGTGTCC GGGTCTCCGA ACTCTGCAAT ATGAATGTGG AAGATATCGA TTTCGACGAG
CATACCATTC GGATCCGGGG GAAGGGCGAC AAGATCCGGA TTGTCTTTGT TGACGATGAG
ACCCTTGCCG GTATTCAAAA ATTTGTGGGC AACCGTATTG CAGGTCCCCT TTTTATCGGG
CAGCAGGGCA AGCATATCTC GCCAAGGGCA ATCCAGCATA TTTTCAAACA TTATGCCCCG
GCCGGTATCA CTCCCCATAA GATCCGCCAT AGCTATGCAA GTGAACTGTA CCGCCGGTCC
AAGAACCTCC GGGTAGTACA GGAGAACCTG GGCCACACCT CCATCAAGAC AACAGAGGTA
TACCTGCACA CCGATATCGA TGAACGTCGC CAGGTGTACC AGCAGTTTTT CCCGCTTTCG
AGCGATAATG AATCCTCGTG A
|
|---|
| Protein sequence | MGSGYFSDWL KSYRNYLRMR NYSSRTLDSY EQVIRHFGYY VWLRRHTEVT KLVFFWKDLE
NARLDTSVDV PPSMITDFLS FVSTMRTYKP KTFHRIISTL SSFYRFLSVQ GAVVANPLAG
IERPRIKQQE VKYLKHNQVL RLIDSIEDPR DKLIVRTIYS TGVRVSELCN MNVEDIDFDE
HTIRIRGKGD KIRIVFVDDE TLAGIQKFVG NRIAGPLFIG QQGKHISPRA IQHIFKHYAP
AGITPHKIRH SYASELYRRS KNLRVVQENL GHTSIKTTEV YLHTDIDERR QVYQQFFPLS
SDNESS
|
|---|
| |