| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mboo_0521 |
|---|
| Symbol | |
|---|
| ID | 5411096 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Candidatus Methanoregula boonei 6A8 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009712 |
|---|
| Strand | - |
|---|
| Start bp | 502318 |
|---|
| End bp | 503043 |
|---|
| Gene Length | 726 bp |
|---|
| Protein Length | 241 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 640867739 |
|---|
| Product | thymidylate synthase |
|---|
| Protein accession | YP_001403682 |
|---|
| Protein GI | 154150064 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0207] Thymidylate synthase |
|---|
| TIGRFAM ID | [TIGR03283] thymidylate synthase, methanogen type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 0.700013 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGAGTCA TCCGGGCCCC GTCAATCGGG CGGGCACATG AGCAAGTCGT AAAGATGATC
CTGGAGAAAG GCCGGGTCCT CCAGACCGAA GATGACGAGG CTACCGTAGA ATTTGAAGAA
GTGGCCCTCC AGATCGATAC CCCCCTTGCC GGGCCACTCG TAAGCCCACA TTCCCGGTTC
CAGCAGAAGT TTGTCGAGCA GTACGCAACC GATCTTCTCC ATGGATCGCA CTCGTCTTTT
GAATATGATT ACCATGGCAG GCTCTTTGAC TGGGGAGAAC GGCTCTTTGT AGACGGAGTA
CCTGTACATG TAGATCAGAT CGAATATATA GCAACCAAAC TCCGACAGTC ACCGGTTAGC
CGCCGGGCCA TCGCCATTAC GTGGAACCCC GTCATCGATG AGAAACTCAA CGACTGCCCC
TGCCTCCAGC TCGTGCAGTG CGTGCTCCGG GACGGGAAAC TGTGCATGAG AGTGATCTTC
CGGAGCAACG ACATGCTTAC TGCCGCTGGG GCAAACATGT ACGCTCTTGT CCAGCTCCAG
AAGTCCATTG CAGAGCGTCT TGGCGTCGAA TGTGGTACCT ATACGCACAT CTCGCTTGTC
CCCCATATCT ACTACCTCAG GGACATGCAC GACATAGAAC CATTCTGCGG AAGAGGGGAT
CTGATCCAGC CGGTACAGGA AGTCTGCCGG GCCTGTGGCC GGTGCCCTCG GGCAAAGACT
GCCTAA
|
|---|
| Protein sequence | MRVIRAPSIG RAHEQVVKMI LEKGRVLQTE DDEATVEFEE VALQIDTPLA GPLVSPHSRF
QQKFVEQYAT DLLHGSHSSF EYDYHGRLFD WGERLFVDGV PVHVDQIEYI ATKLRQSPVS
RRAIAITWNP VIDEKLNDCP CLQLVQCVLR DGKLCMRVIF RSNDMLTAAG ANMYALVQLQ
KSIAERLGVE CGTYTHISLV PHIYYLRDMH DIEPFCGRGD LIQPVQEVCR ACGRCPRAKT
A
|
|---|
| |