| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mboo_0516 |
|---|
| Symbol | |
|---|
| ID | 5410837 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Candidatus Methanoregula boonei 6A8 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009712 |
|---|
| Strand | + |
|---|
| Start bp | 497707 |
|---|
| End bp | 498576 |
|---|
| Gene Length | 870 bp |
|---|
| Protein Length | 289 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640867733 |
|---|
| Product | Pre-mRNA processing ribonucleoprotein, binding region |
|---|
| Protein accession | YP_001403677 |
|---|
| Protein GI | 154150059 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1498] Protein implicated in ribosomal biogenesis, Nop56p homolog |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 37 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGTCCT GCTGGTTTGG TGATATCGAT GCAGGGAAAT GCACCCCGTT TACCGGTGAT
GCCGCCGCAT ACGCCCGCCG TGTCCAAGAG CTCCGGGCCA GCACGGATGC CATTGTACCC
ATTGACTGGC AGCAGGCCGT GGTCTGCGGG ATCTGCCGTG ACCGTGCTGA ATACCTTATC
CTGCTCCAGA AGGTCTGTAT TGCAGGATCG GAGCAGGCGG TAAAAGAGCA GTACGCGGCA
AAGGATGTGG AGCTGCTCCA GATGGTGCGG ACCCTGGACG AGATGGACAC GGTCATTAAC
CTCCTGTCCG AACGGGTCGC GGACTGGTAC CAGATCCGGC ACCCGTCGTT CTCCCGCAAA
TACCGCAGGA CACCGGCGCA TGTGCTGGTC AGATCCATGG GTGGAAGGGG GGGCGCTCTC
GGGAAAGTTG CGACAGGTAT CACCGGCCTT GCCGATACCC GGACTGCCCT TGCAAAGGTG
GTATCGGCCC GGGCCTGCGA GGTGATGCCC AACACGAGTG CTCTTATTGG AGGGCTGGTT
GCGGCTCGGC TTCTCTCCCA GGCAGGGGGA TTAAAGGAAC TCTCCCGGCT GCCTGCAAGT
GTAATCCAGG TGCTTGGGGC CCGGACCGCC CTTTTTGCGC ATATCAGGAC AAATGCCCCC
TCACCCAAGC ATGGGATCAT CTTCCAGCAC CGGCGGGTGC ATAACGCCTC CCGGGAAACG
AGGGGAAAAG TTGCCCGGGT CCTTGCGGGG AAACTGGCGA TTGCCGCCCG TCTGGATTAT
TACCGGGGAT ACCCGGATCC CGCTTTCCTT GAGAATGCCC AGGCACGTAT CGACCAGGCA
GGAGTCGGCC CGGGCGAGGT GCGGTCATGA
|
|---|
| Protein sequence | MQSCWFGDID AGKCTPFTGD AAAYARRVQE LRASTDAIVP IDWQQAVVCG ICRDRAEYLI
LLQKVCIAGS EQAVKEQYAA KDVELLQMVR TLDEMDTVIN LLSERVADWY QIRHPSFSRK
YRRTPAHVLV RSMGGRGGAL GKVATGITGL ADTRTALAKV VSARACEVMP NTSALIGGLV
AARLLSQAGG LKELSRLPAS VIQVLGARTA LFAHIRTNAP SPKHGIIFQH RRVHNASRET
RGKVARVLAG KLAIAARLDY YRGYPDPAFL ENAQARIDQA GVGPGEVRS
|
|---|
| |