| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mboo_0362 |
|---|
| Symbol | |
|---|
| ID | 5411424 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Candidatus Methanoregula boonei 6A8 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009712 |
|---|
| Strand | - |
|---|
| Start bp | 357280 |
|---|
| End bp | 359085 |
|---|
| Gene Length | 1806 bp |
|---|
| Protein Length | 601 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 640867576 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001403525 |
|---|
| Protein GI | 154149907 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1689] Uncharacterized protein conserved in archaea |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.102207 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCAATAA AACGGGATAT CGGAATATTG CTCATTATCA CATGCCTTGT CGGGATTTGT
GCTTTTTTTA TCATAAATAC AACTACACCA ACATCTTATG AATCTTGGAA TGAAAAAACC
GTGGAAAAGA TCGGTTACTC CCGTGCACCT GAAGGGGGAT ATGCGGATTT TGCTCCTGAT
GATCCCGATT TGTATTCTAC ATATTACTTC TCTCTGGCAT TGAAAAATGA GCATATTGGC
TTGATGCAGA AAGAACAGAC AGAGCAATGG TTGTATTCCC GTGAACAGGA TTTCCTCAGG
AATACTTCTG AGGTTTCTCT CAAAGACCTA TATTACCTGA CCGGCTGCAT GAAAAACTAC
GATATCCCTC CGGAAAATCA GTCTGGCATC ATATCCCTTG TTGAACAATT CGGGAAATCA
GATGGCTCTT ATGCAGACAG GCCGGGATTT AATGGATCCT CCCTGGACAC CGCAAGGGCT
TTGAAAATCT TGGAGTTTAC CGGAAACAAT GTAGTAACGG CAAATATTAC CCGCGAGTGG
CTTATGCAGC AGTGGAAAAG CGATCAGATA TCCACTGATG AGGACTACCT ACTAGCAGAA
ACAGAAATCC TGGTCCCGGC ATTTCATCTG GCAAATATCG ATCCAAATGA GTTTGAGATC
GACAGTTCAC AAAAAAGTGT AGAGGAACAA CATGCCTTGA TATGGAAATC CCGATTGGGG
GATCTACCCG AAAAAAAAAT TGATCTGTTC ACTCTTAATG CTCTTGAAAC AGAATTGCGT
ACATCCGGAG GGCTCACACC GGATATCTCA AGAAAAGTAC AGGATTACGT GTACTCCCTG
GAATTACCTG ATGGAGGGTA TAATGCGATC CTGAATAACT ATGGCGACGC CCAGGGAACA
TATCTGGCAA CAAAATTGTT ATCTGACATT GGAAGTCCGG TAAACAACAG GACGATTAAT
TTCATCAAGC GGCATGAGAG CCGGTACGGA GGCTTCCACC CTGCATTTAA GATCACTCCA
TCTCCCAAAG ATACCTGGTT TGCAATCCGA GCATTGACTC TGCTGGATCC ACGCAACCCT
ACGGTTTCTG AGATCAAACC TTGGCTTGAC ACCCAGCTTA GTAGTCCCCA CCTTTCTCCA
GAAAACCAGT ACTATGTTGT GATGACATAT GGGGAATTGG GGGAATCGGT TCCCAACGCA
GCCTCCATTA GGAGCACGCT TGAACAGCAA ATTACAACAA TTTCCGGATC CGCTTCTGGG
CCGGGAGATA TGGAACAGAT TTTTTACCTG CTAAATATGG CAAAAGTGGT AGATCTCTCT
TTAGACTCTG TGCAGAAAGA CCGTTTAATC CGAAAAATCA ACGAAATTCA GAATGCTGAT
GGGTGTTACG GTCGAGAAAG ATCGGATCTT GTGACTACAT ATTATGCTTT AGGCTCGCTG
GATGCGCTTT TGGCAACACC TTCAAATCCA GATGCGTGTG CCGCCTGGAT AGAACAGGGG
TATACACGAG ATGGGGGATA CCGATATCGT GGGGAAAACT GGTCCACGAA TTTTTCCTAC
ATATCGCCAA CTTGGTTGTC TATTTCATCA CTAGATTATC TGCACAAATA TCCAAAAACT
GCGGGTAATA CTCTCCAGTG GATCAACAGT AGCAGATATC CCAATGGAGG TATCCAATTG
ATGCCGAAAC AACCGGAAAC CGAAGTCAAT GACGCCACAT TCCGGGAAAG CCTCGAATAC
ACCGTTCAGG GCCTAGAGAC CGAGAGAATC TTACTGCATA ATGGTGGTTT TTCAAGAGGT
TACTGA
|
|---|
| Protein sequence | MSIKRDIGIL LIITCLVGIC AFFIINTTTP TSYESWNEKT VEKIGYSRAP EGGYADFAPD
DPDLYSTYYF SLALKNEHIG LMQKEQTEQW LYSREQDFLR NTSEVSLKDL YYLTGCMKNY
DIPPENQSGI ISLVEQFGKS DGSYADRPGF NGSSLDTARA LKILEFTGNN VVTANITREW
LMQQWKSDQI STDEDYLLAE TEILVPAFHL ANIDPNEFEI DSSQKSVEEQ HALIWKSRLG
DLPEKKIDLF TLNALETELR TSGGLTPDIS RKVQDYVYSL ELPDGGYNAI LNNYGDAQGT
YLATKLLSDI GSPVNNRTIN FIKRHESRYG GFHPAFKITP SPKDTWFAIR ALTLLDPRNP
TVSEIKPWLD TQLSSPHLSP ENQYYVVMTY GELGESVPNA ASIRSTLEQQ ITTISGSASG
PGDMEQIFYL LNMAKVVDLS LDSVQKDRLI RKINEIQNAD GCYGRERSDL VTTYYALGSL
DALLATPSNP DACAAWIEQG YTRDGGYRYR GENWSTNFSY ISPTWLSISS LDYLHKYPKT
AGNTLQWINS SRYPNGGIQL MPKQPETEVN DATFRESLEY TVQGLETERI LLHNGGFSRG
Y
|
|---|
| |