| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mboo_0085 |
|---|
| Symbol | |
|---|
| ID | 5411057 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Candidatus Methanoregula boonei 6A8 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009712 |
|---|
| Strand | - |
|---|
| Start bp | 76738 |
|---|
| End bp | 78207 |
|---|
| Gene Length | 1470 bp |
|---|
| Protein Length | 489 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 640867299 |
|---|
| Product | succinate dehydrogenase/fumarate reductase iron-sulfur subunit |
|---|
| Protein accession | YP_001403252 |
|---|
| Protein GI | 154149634 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0247] Fe-S oxidoreductase |
|---|
| TIGRFAM ID | [TIGR00384] succinate dehydrogenase and fumarate reductase iron-sulfur protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.52676 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 42 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGGGAAC TTCGCGTCAC GATCCTGCGC TTTGACCCAA AAAAAGATCC GGCACCCCAC
GCGGAAACCT ATGCGGTAAA CGTCAGCGAA GGGGCCCGGG TCCTGCATGT CCTGCACGCG
ATCCACGACG AAATCGACCC GACGCTCTCC TACCGGTACT GCTGCGGCTC GGGGCAGTGC
GGGAGCTGTG CAGTGCGGGT GAACGGTGAG CCAGTGCTCG CGTGCATGAA GGAAGCAACC
GACGGCATCA CGATCGCTCC CTTAAACCTG CCGGTCAAAA AGGATCTCGT GGTCGATCTT
CTCCCCAAAA TTGCCGCCAT TGCATCCCTT GTCCCCTCCG GAGAGGCGGA CGCCCGGCTG
CCCACAAAGG CGCAGATCGA TGAGATAAAA CCTCTCCGGG ACTGCATCGA ATGCCTCGCG
TGCGTCTCGG TCTGCCCGGC CATGACCGTG ACAGAATTTC TCGGGCCCAC GGCCATGCGC
CAGGAGATGC GCCTTGCCCT TGACCCCCGG GACACCGGCA CCCGCGTGCC GGATGCAGTC
CGCGACGGGC TGTTTACCTG CACGAGCTGC CAGGCCTGCT ACCTTGCCTG CCCCAAGAAG
ATCAAGATAC CGGCAAAGGC AATCGAGAAG CTCCGGGCGC TTGCCAACCG GCAGGGGCTC
ACCCTCCCCC GGCACCAGGA GGTCGCAGCG CTCATCGAGA AGACCGGGCG CAGCGTTCCA
CAAACTTCAG AGTCGCTCCT GGAAAAAGTG AGTGAAGTCA TCGAGCCCTA TGGCCCGGTA
AAGGGCACGA TCGGATTCTT TGTCGGCTGC ATGTACAACC TGCGCCAGCA GCAGTCTGCC
CTTGATGCGC TGGAAGTGCT GAAAAGAAAC GGCATCAGAG TGATCATCCC CAAAGAGCAG
ATCTGCTGCG GTTCGCCGCT GATCCGGACC GGCCAGCTCT CCTATGTCGA TACCCTCAGG
AAACGCAACA TCGACACGTT CCAATCCCGG GGTATTGTCA CCGTGATGAC TATGTGTGCC
GGCTGTGGGT CGACCCTGAA GCATGATTAC GTAACGCCGT TTAAGGTCAT GGACATCAAC
GAGGTGCTGG TCCAGTACGG GATCGAGCCT CCCGCACGGC TCCCGATCCG GGCAACCTAC
CACGATCCCT GCCACCTGAT GCGGGGACAG GGCGTGAAAG ACGAGCCGCG CCAGCTGATC
CGGCAGGCAG TTGATTTAAT CGAAATGCCG GCTATCTGCT GCGGATCGGG CGGCGGCGTG
AAATCCGGTC TGCCCGATGA GGCGGCGGCC CTCGGGGAAA AACGGCGGGA AGAGATCAGA
AAGACCGGGG CAGAGATCGT TATCACTTCC TGCCCGTTCT GCGAGTTCCA TATCGCGAGC
CATTCTGATA AACCGGTGAA AAACATCATG ACTGTGCTGC TGGAAGGTTA CCGGGAGAAG
GACCGGCTGG CAGGAAAGAA GAACGAATAA
|
|---|
| Protein sequence | MRELRVTILR FDPKKDPAPH AETYAVNVSE GARVLHVLHA IHDEIDPTLS YRYCCGSGQC
GSCAVRVNGE PVLACMKEAT DGITIAPLNL PVKKDLVVDL LPKIAAIASL VPSGEADARL
PTKAQIDEIK PLRDCIECLA CVSVCPAMTV TEFLGPTAMR QEMRLALDPR DTGTRVPDAV
RDGLFTCTSC QACYLACPKK IKIPAKAIEK LRALANRQGL TLPRHQEVAA LIEKTGRSVP
QTSESLLEKV SEVIEPYGPV KGTIGFFVGC MYNLRQQQSA LDALEVLKRN GIRVIIPKEQ
ICCGSPLIRT GQLSYVDTLR KRNIDTFQSR GIVTVMTMCA GCGSTLKHDY VTPFKVMDIN
EVLVQYGIEP PARLPIRATY HDPCHLMRGQ GVKDEPRQLI RQAVDLIEMP AICCGSGGGV
KSGLPDEAAA LGEKRREEIR KTGAEIVITS CPFCEFHIAS HSDKPVKNIM TVLLEGYREK
DRLAGKKNE
|
|---|
| |