Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YpsIP31758_4164 |
Symbol | |
ID | 5388131 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pseudotuberculosis IP 31758 |
Kingdom | Bacteria |
Replicon accession | NC_009708 |
Strand | - |
Start bp | 4700282 |
End bp | 4701019 |
Gene Length | 738 bp |
Protein Length | 245 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 640867192 |
Product | polar amino acid ABC transporter permease |
Protein accession | YP_001403106 |
Protein GI | 153949784 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0765] ABC-type amino acid transport system, permease component |
TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
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Plasmid Coverage information |
Num covering plasmid clones | 48 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATCTAC ATCATCTGAC TGATTGGCTA TTAGCCCCGC AATATCTTGG TTGGTTGTGG GATGGTTTCC TACTGACGTT GTGGATTTCC GCCTGTACGG TGGTGGCTGC CACGTTATTG GGATTTTTGC TGGCCGCGGC CAGAGATAGC GAGTTAAAAG CCTTGAAAGG CTTTGCTATT GGCTACAGTG CCTTATTCCG AAATACTCCT CTGCTGATCC AATTATTCTT TTGGTACTTT GCTGCCAGCC AATTCCTGCC AGCTTCTTGG ATCCCTTGGC TCAATACTCC CCATGAAATT ACGGTTGCCG AATTAACTCT GGCCTGGCCC TCTTTTGAGT TTTTAGCCGG TTTTGTCGGG TTGACACTCT ATTCCACCGC ATTTATTGCT GAAGAGCTGC GTGCGGGCAT CAGCGGCGTA GCCAAGGGGC AGAAATATGC TGCACATGCG CTGGGGCTGA CGGGGTGGCA ATCGATGCGG TATGTGGTTT TGCCGCAGGC TTTGAAAATA GCCATGCCTC CGTTGCTGGG CCAATATATG AATATTATTA AAAACTCTTC ATTGGCAATG GCGATTGGTG TAGCTGAACT CTCCTATGCT TCCCGGCAGG TTGAAACTGA AACATTACGG ACGTTTCAGG CATTCGGGGT TGCAACCCTA TTGTATATTT TCATCATCGC GCTAATTGAG GCTTGGGGTA TGTGGCGTCA ACAGCGAACT GTCGTCCGAG GGCACTGA
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Protein sequence | MNLHHLTDWL LAPQYLGWLW DGFLLTLWIS ACTVVAATLL GFLLAAARDS ELKALKGFAI GYSALFRNTP LLIQLFFWYF AASQFLPASW IPWLNTPHEI TVAELTLAWP SFEFLAGFVG LTLYSTAFIA EELRAGISGV AKGQKYAAHA LGLTGWQSMR YVVLPQALKI AMPPLLGQYM NIIKNSSLAM AIGVAELSYA SRQVETETLR TFQAFGVATL LYIFIIALIE AWGMWRQQRT VVRGH
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