| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpsIP31758_4115 |
|---|
| Symbol | selA |
|---|
| ID | 5388285 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pseudotuberculosis IP 31758 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009708 |
|---|
| Strand | - |
|---|
| Start bp | 4643427 |
|---|
| End bp | 4644815 |
|---|
| Gene Length | 1389 bp |
|---|
| Protein Length | 462 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 640867144 |
|---|
| Product | selenocysteine synthase |
|---|
| Protein accession | YP_001403058 |
|---|
| Protein GI | 153947126 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1921] Selenocysteine synthase [seryl-tRNASer selenium transferase] |
|---|
| TIGRFAM ID | [TIGR00474] seryl-tRNA(sec) selenium transferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 55 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGCAG AACCACACCC ATTATATCGC CAGTTACCGG CCATTGATCG CTTACTGAAT
GAGCCTGAAA TGGCCCCTTT ATTGGCGGAG TATGGCCCCG TTCTTTTGGC CGATACCCTA
CGTCAATTAC AGGCAGAAGC TCGTGAATAT ATCGGTCAAT TTCATACTCT GGCTGATTGG
TGTGCGGACT GGCCTGCCGC TTTACGTCAA CGATTGAATC AACGGCAACC CGCGTTAAAA
CCTGTGTTTA ATCTTACTGG CACGGTGCTG CACACCAATT TGGGCCGTGC ACCGCTGGCA
GAATCTGCTA TCGCGGCGGT GACCGATGCC ATGCGAAGTG CGGTCACCTT GGAATACTCC
TTAGAGGGCG CGGGCCGTGG GCACCGTGAT CGGGCTGTCG CCGATTTACT CTGTGCCCTG
ACCGGTGCGG AAGATGCCTG TATCGTCAAT AACAATGCGG CGGCGGTCTT CTTGTTGTTA
ACGGTCATGG CGGCGGGCAA GCAAGTCGTG GTCTCCCGTG GTGAACTGGT CGAGATTGGC
GGTGCGTTTC GTATTCCTGA TGTCATGCGT CAGGCAGGGT GTGATCTGGT CGAAGTGGGT
ACCACGAACC GAACACATCT GAAAGATTAT CGGCAGGCCA TCAATGAAAA TACGGGTCTG
CTGATGAAAG TTCATACCAG CAATTACAGT ATCGAGGGTT TCACGGCCGC AGTATCCGAA
CAGCAACTGG CGGCATTGGG GCAAGAGTGT TCCATCCCGA CCGCGACCGA TTTAGGCAGT
GGTTCGCTGG TGGATATGAC CCGTTACGGT TTACCCGCCG AGCCCATGCC ACAACAGTTG
ATTGCGGCAG GCGTAGATTT AGTGACCTTC TCCGGTGATA AACTGTTAGG TGGGCCGCAA
GCGGGGATCA TTCTCGGTAA AAAACAGTGG ATTGAGCGGT TACAGCAACA TCCGCTGAAG
CGAGCATTGC GGGCCGATAA AATGACACTG GCAGCTTTGG ACGCCACCTT GCGCCTCTAT
CAGCAGCCAG ATCGGTTGGT TGAACAACTG CCATCTCTGC GGCTACTGAC CCGCCCCGCC
TCAGAGATTG CCGCGTGTGC ACAACGCCTG CTGGCCCCAC TGATTGCCTG TTATGGCACA
GATTTCACTT TGGATATTGA ATCATGTTGG TCACAAATTG GCAGTGGTTC GCTGCCGGTT
GATCGCTTGC CCAGTTGGGC GCTGACGTTT ACGCCTAAAG ATGGGCGCGG TAGTACATTG
GAAGCCTTAA CGGCGCGTTG GCGCACACTG ACGAAGCCGG TCATTGGTCG TGTGGCTGAT
GGGCGTTTGT GGCTGGATTT ACGCTGTCTG GAGGATGAGG CGGCGTTGCT AAGGGAATTG
GCATCATGA
|
|---|
| Protein sequence | MSAEPHPLYR QLPAIDRLLN EPEMAPLLAE YGPVLLADTL RQLQAEAREY IGQFHTLADW
CADWPAALRQ RLNQRQPALK PVFNLTGTVL HTNLGRAPLA ESAIAAVTDA MRSAVTLEYS
LEGAGRGHRD RAVADLLCAL TGAEDACIVN NNAAAVFLLL TVMAAGKQVV VSRGELVEIG
GAFRIPDVMR QAGCDLVEVG TTNRTHLKDY RQAINENTGL LMKVHTSNYS IEGFTAAVSE
QQLAALGQEC SIPTATDLGS GSLVDMTRYG LPAEPMPQQL IAAGVDLVTF SGDKLLGGPQ
AGIILGKKQW IERLQQHPLK RALRADKMTL AALDATLRLY QQPDRLVEQL PSLRLLTRPA
SEIAACAQRL LAPLIACYGT DFTLDIESCW SQIGSGSLPV DRLPSWALTF TPKDGRGSTL
EALTARWRTL TKPVIGRVAD GRLWLDLRCL EDEAALLREL AS
|
|---|
| |