Gene YpsIP31758_4072 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagYpsIP31758_4072 
SymboldppD 
ID5384984 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameYersinia pseudotuberculosis IP 31758 
KingdomBacteria 
Replicon accessionNC_009708 
Strand
Start bp4588557 
End bp4589537 
Gene Length981 bp 
Protein Length326 aa 
Translation table11 
GC content52% 
IMG OID640867100 
Productdipeptide transporter ATP-binding subunit 
Protein accessionYP_001403016 
Protein GI153948539 
COG category[E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism 
COG ID[COG0444] ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component 
TIGRFAM ID[TIGR01727] oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 


Plasmid Coverage information

Num covering plasmid clones58 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCACTTT TAAATGTAGA TAAATTGTCG GTGCATTTTG GTGACGACGC TGCGCCGTTC 
AAGGCCGTAG ATCGTATCAG TTACAGCATT GATCAAGGAC AGGTGGTGGG GATTGTCGGT
GAATCCGGCT CCGGTAAATC GGTCAGCTCA CTGGCGATCA TGGGGTTGAT TGATTATCCC
GGAAAGGTGA TGGCCGATAA GCTGGAATTT AACGGTCGCG ACCTGACCAA AATTTCGGAA
AAAGAGCGGC GTCAATTGGT AGGCGCGGAA GTCGCGATGA TTTTCCAAGA CCCAATGACC
AGCCTGAACC CGTGTTACAC CGTTGGTTTT CAGATTATGG AAGCGTTAAA GGTGCATCAG
GGGGGCAATC GCAAAACTCG CCATCAGCGG GCGGTAGATT TGTTGACGCT GGTGGGTATC
CCTGATCCTG CTTCGCGTCT GGATGTGTAT CCACATCAAC TCTCCGGTGG GATGAGCCAA
CGGGTGATGA TCGCCATGGC GATTGCCTGT CGGCCTAAAT TGCTCATTGC CGATGAGCCA
ACGACCGCGC TGGATGTGAC AATTCAGGCG CAGATTATTG AATTACTCTT GGAATTACAG
CGGCGTGAAA ATATGGCGTT GCTGCTGATT ACCCATGATC TGGCACTGGT TGCAGAAGCG
GCCCATCAAA TTATTGTGAT GTATGCGGGT CAGGTAGTTG AAACCGGCAA GGCGGCGGAA
ATTTTCCGTG CGCCACGCCA TCCGTACACA CAAGCATTGC TACGCGCATT ACCGGAGTTT
GCTCAGGATA AAGCGCGGTT AGCATCCTTA CCGGGTGTGG TACCGGGTAA ATATGACCGA
CCAGAAGGCT GTCTGCTTAA CCCGCGTTGC CCGTATGCCA CTGATCGTTG TCGCGATGAA
GAGCCGGAGT TACTGGGCAC ACCAGGGCGT CAGGTTAAAT GCCATACACC GCTTAATGAT
GCGGGGAGGC CATCCCTATG A
 
Protein sequence
MALLNVDKLS VHFGDDAAPF KAVDRISYSI DQGQVVGIVG ESGSGKSVSS LAIMGLIDYP 
GKVMADKLEF NGRDLTKISE KERRQLVGAE VAMIFQDPMT SLNPCYTVGF QIMEALKVHQ
GGNRKTRHQR AVDLLTLVGI PDPASRLDVY PHQLSGGMSQ RVMIAMAIAC RPKLLIADEP
TTALDVTIQA QIIELLLELQ RRENMALLLI THDLALVAEA AHQIIVMYAG QVVETGKAAE
IFRAPRHPYT QALLRALPEF AQDKARLASL PGVVPGKYDR PEGCLLNPRC PYATDRCRDE
EPELLGTPGR QVKCHTPLND AGRPSL