| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpsIP31758_4055 |
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| Symbol | |
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| ID | 5384747 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pseudotuberculosis IP 31758 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009708 |
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| Strand | - |
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| Start bp | 4565506 |
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| End bp | 4568709 |
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| Gene Length | 3204 bp |
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| Protein Length | 1067 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640867083 |
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| Product | putative autotransporter protein |
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| Protein accession | YP_001402999 |
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| Protein GI | 153950137 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3468] Type V secretory pathway, adhesin AidA |
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| TIGRFAM ID | [TIGR01414] outer membrane autotransporter barrel domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 36 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAACAA ACCGCTCTAC GCTTTCCCCG TGCTTTAGTA AAACAGTGAT AGCCAGTTTG
CTGGTGCCTC TTTGCAGTCC CCTGTATAGC TGGGCGGTAC AAACTGCCAG CATAACGGAT
GGCAGCACTA TGGTTATCTC TGGGGGTTAT GACACTGAGG CTAATAACCA CTCGGCGGTA
TTTGTGCAAG GCTCCGGTAG CACCATTAAT GGTGGCTCCG ATGTCGTTAT TGAAACCACG
GGCTTTGGTG CAATTGGTGC CTATTCTTCT GAAGGTGGGA CGTTGGGTTT GACGGGCTCG
ACTATCAAGA CCGAGAGTGG TACGGCTTTT GGTGTCTTAA ATGATAAAGG TACGGTGAAT
TTACAAGGTG GTACGATTAC CACGAAAGGT CAGACGGCAT ATGGCGTGTA TTCCTCTGGT
TTGGGCAGTA ATACCGATAT TCACAGTTCG GTGATCACGA CCAGCTACTC GTTAACCCAC
GCTATTTATG GTGCGGGCGG GACGGGGTTG ACATTGAACA ATACCACCGT CAATACCAGT
GGCAGTGGTA GCTATGGCAT TTATCTGAAT GGTCCCGGAG GGAGCTTAAC GGGTGCGGAT
AATACCATTA ATAGTACTCA TGCGACCAAT GGTGCGGGTA TCTATATTTC ATCGGGTGGC
TCAAATGCGA CTTTAGATAA CACCACACTG AATATCACTA AAGGTGCTGT TGGTGTGAAT
GTGGGGGAGG GATCCTCTAT TACGATGGAT GGCCTTATTG CCACCGGTAA TATCACCAAC
CTATTTAAAG TGAACGGGAA TGCCTCGGTC AGTAATGCCA ATATCGAATT AGCCGCGGGT
GGCTTATTAA TGGCACAGGG CCACAGTGCG TCCAATCAAG CGGTCATCAT ATTAAATAAT
GTCGATGCTA TTTCTAACAG CGGCGGCACG ACACTGGTTG ATGTTAATAA GGACGCTGAC
GTCACCATTA ATGAGGGGTC TTACCACTCA AAAGGTAACA ATGCGAAGGG GATCTGGGTT
CGAGATAATA GCTCATCGCT GAATGTCGAT AACGCCGTGA TTATCACCGA GGGCGTGAAT
GCAACGGCGA TTGAAAATCG TGGCACCGCT ATCGTAGAAA ATACTACGGT GATAACTAAA
GGGAATAACT CTCACGGCCT CTACTCTGAG CAGAGCCTTG ATGCCACCAA TATGGCAATT
TCCACTGCGG GGATTGGCAG TATTGGGGCG GCGGCAGCTA AAGGCGGTAA CCTAAATCTG
AATGATGCCC TCATCGAGAC GACGGGTAAT TCAGGTATGG TGCTGGGTAC TTTTGCCGAC
TCATCCATCA GCGCTAAAAA TATTACAGGT CTATCGACCG GCGCTGGTGC TTATGCCTTG
TGGGTCGATG ATGGTAGCTC AATCCTTCTG GAAGAGAGCC AAATTACCAC TCAAGGCCAG
GGCGCAGGAG GGATTTATGC CTCAAATACC GGGACCGGCT CTCACACCGC TTATACTCAG
GTTACGCTGA ACAACTCACA GATTCATAGT GAGCAGGGGC CGGGCATCTG GGCTAATGGT
GCTGACATTA ATGTTGATGT GAAGAATGGT TCGCAGTTAA CGGGAGGCAA TGGGTTATTG
GTCTACGCCT CGAGTAATGC AGGGGCAGCC AGTAATGTCA ATGTGAATGG CGATAACCAC
GCCGTTCTGT TGGGTGATAT TCACGCCGCA GAAAACAGCA ATATTAACCT GGCACTGAAT
AATAATTCCG TTTGGACGGG GGCGGCAACT AACGCCAAAC AGGTTGATAT CGACAGCAGC
AGTATCTGGA ATTTAACGGG TGATGCAGAT GTTGAGTCAA TGCATGTATT GGGCCAGATG
AACTTTATCT CAAATAGCAG TGACACCAAT TCACGAGCCC CCTACGATAA TTTCAGTACC
TTAACGATCA ACAGTAATGT CACCGGGAGT GGCAGTTTTA CCTTTAATGT GCAATTGGGT
GATAACGACT CGCCAGTGGA TAGACTCTAT GTAATAGGTA ATGCCTCTGG TGACCATGGG
GTTCAGGTTA TTAACCAAGG TGGTTTGGGT GCGTTGACCA CGGGTGACGG GATTAACCTG
ATTACCGTTG ATGGGGAGAC CCATTCTGGC TCATTTACTA TGAGCAACTC GGTGAGCGCA
GGGGCCTATG AGTATTTTTT GTATCAGATA GATGACCACC GTTGGAACCT GCAATCTAAT
CTCATCAAGC CTGATCCAGG CGTTGATCCA GGCGAAGAGA CAGCTTACCG CCCTGAAGTT
CCTGGCTATA TTGCCGCACC TTGGTTAAAT GCATTTTATG GTTTTACTAC TTTGGGTAGC
TTGCACGAAC GCCGTGGCTC GGCCGAGGGA GCAGCCGAAG GGTTTAATCA AGACTCATGG
GGCCGGATCC GTGGGCAGCA TAATAATTTT GAGGCGGGCC GTTTTAGCTA CGATTCAAAT
ATCTGGTTTA TGCAATTGGG TCATGATGTC TATCAGGCCA AAAATGCCGC AGGCACGCAA
GTGACTGGCG GTATGATGAT CACCCTAGGT AAGCAGAATA GCGATACACG GGATCGGGCG
CGGGCGATAA ATCCGGATTT GTCGATCGAT ACCGGCAAGA TCAAAACCGA GGCTTATGGG
TTTGGGGGTT ATTACACCCT GATGACCGAG GAAGGCGGTT ACCTTGATAT CGTTAGCCAG
GCGACGCTAT ACCGCAACAA CTATGAGAGC CAACATAATA CCAAGCATAA TGGCTACGGT
GTTGTGATGT CTGCCGAAGT GGGTCAGCCG TATCCACTGG CTGCTGGCTG GGTAGTGGAG
CCTCAGGGGC AGCTAAAATA TCAATACCTG CACCTGAGTC CGAAGAATTT CAACGATGCC
ATTTCAGAGA TCGGGGGGAC GGATTACTCT GTTGGTCAGG TACGTGCTGG CCTGCGTCTG
TTCAGTGATT CGAGCGAGAA GCGGGACATT AAGCCTTATC TGACCACCGA TGTGCTTCAC
CAGTTAGGCC GAAACCCACA GGTGACGGTA GCGACGGTGG ATATCCGTCC TGACTTCACA
AAAACCTTCT GGCAGGGGGG CGCAGGGGTG ACCGCTAAAG TGAATAGTCA GGTTGATCTC
TATGCCGATG CGAAATACCA AAAATCCTTT GATGGCAAAT TAGATGGCTA CTTAGGTAAT
TTGGGCGTGA AAGTCAGTTT CTGA
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| Protein sequence | MKTNRSTLSP CFSKTVIASL LVPLCSPLYS WAVQTASITD GSTMVISGGY DTEANNHSAV
FVQGSGSTIN GGSDVVIETT GFGAIGAYSS EGGTLGLTGS TIKTESGTAF GVLNDKGTVN
LQGGTITTKG QTAYGVYSSG LGSNTDIHSS VITTSYSLTH AIYGAGGTGL TLNNTTVNTS
GSGSYGIYLN GPGGSLTGAD NTINSTHATN GAGIYISSGG SNATLDNTTL NITKGAVGVN
VGEGSSITMD GLIATGNITN LFKVNGNASV SNANIELAAG GLLMAQGHSA SNQAVIILNN
VDAISNSGGT TLVDVNKDAD VTINEGSYHS KGNNAKGIWV RDNSSSLNVD NAVIITEGVN
ATAIENRGTA IVENTTVITK GNNSHGLYSE QSLDATNMAI STAGIGSIGA AAAKGGNLNL
NDALIETTGN SGMVLGTFAD SSISAKNITG LSTGAGAYAL WVDDGSSILL EESQITTQGQ
GAGGIYASNT GTGSHTAYTQ VTLNNSQIHS EQGPGIWANG ADINVDVKNG SQLTGGNGLL
VYASSNAGAA SNVNVNGDNH AVLLGDIHAA ENSNINLALN NNSVWTGAAT NAKQVDIDSS
SIWNLTGDAD VESMHVLGQM NFISNSSDTN SRAPYDNFST LTINSNVTGS GSFTFNVQLG
DNDSPVDRLY VIGNASGDHG VQVINQGGLG ALTTGDGINL ITVDGETHSG SFTMSNSVSA
GAYEYFLYQI DDHRWNLQSN LIKPDPGVDP GEETAYRPEV PGYIAAPWLN AFYGFTTLGS
LHERRGSAEG AAEGFNQDSW GRIRGQHNNF EAGRFSYDSN IWFMQLGHDV YQAKNAAGTQ
VTGGMMITLG KQNSDTRDRA RAINPDLSID TGKIKTEAYG FGGYYTLMTE EGGYLDIVSQ
ATLYRNNYES QHNTKHNGYG VVMSAEVGQP YPLAAGWVVE PQGQLKYQYL HLSPKNFNDA
ISEIGGTDYS VGQVRAGLRL FSDSSEKRDI KPYLTTDVLH QLGRNPQVTV ATVDIRPDFT
KTFWQGGAGV TAKVNSQVDL YADAKYQKSF DGKLDGYLGN LGVKVSF
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