| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpsIP31758_3982 |
|---|
| Symbol | |
|---|
| ID | 5386526 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pseudotuberculosis IP 31758 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009708 |
|---|
| Strand | + |
|---|
| Start bp | 4467164 |
|---|
| End bp | 4469539 |
|---|
| Gene Length | 2376 bp |
|---|
| Protein Length | 791 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 640867013 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001402930 |
|---|
| Protein GI | 153950179 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2183] Transcriptional accessory protein |
|---|
| TIGRFAM ID | [TIGR00426] competence protein ComEA helix-hairpin-helix repeat region |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 37 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATGAAC CACTGAGCCG CATTATTGCA AGCGAACTGC AGGCCCGGCC GGAGCAAGTT
ATCTCCGCTA TCCGCCTGCT TGATGAAGGT AATACCGTGC CCTTTATTTC ACGGTATCGT
AAGGAAGTTA CCGGCGGGTT AGATGATATC CAACTGCGTC AGTTGGAAAG CCGTCTGGGG
TATCTGCGTG AATTAGAAGA TCGCCGCCAA ACCATTCTTA AATCAATTGA AGATCAAGGA
AAACTCACCG ACCAGCTGGC CGGGGCGATC AACGCCACCC TAAGTAAGAC CGAGCTGGAA
GATCTGTATC TTCCTTATAA ACCGAAGCGC CGCACTCGCG GACAAATTGC CATTGAAGCC
GGGTTAGAAC CCCTGGCAGA GCGTTTATGG CAGGATCCAC AACAAGACCC TGAACACACC
GCGCTGGCCT ATGTTGATGC CGATAAAGGC GTCGCTGATA CTAAAGCCGC ATTGGATGGT
GCTCGCTATA TTTTGATGGA GCGGTTTGCC GAAGATGCCA CCCTGCTGGC GAAAGTGCGT
CAGTATCTGT GGAAAAACGC CCATCTGGTG TCAAAAGTCG TGGAAGGTAA AGAGCAGGAA
GGCGCTAAAT TCCGCGATTA CTTCGATCAC CACGAACCTA TCGCACAAGT CCCTTCTCAC
CGCGCATTGG CCATGTTCCG TGGCCGCAAT GAGGGGGTAC TGCAACTGGC CTTGGATCCT
GATCCGCAAT TTGACGAACC GCCGCGTGAA AGTCAGGGTG AACAGATCAT TATCAACCAT
CTTGATCTGC GCTTGAATAA TGCGCCGGCA GACGGCTGGC GTAAGGCGGT GGTCAACTGG
ACCTGGCGTA TCAAGGTGCT GTTGCATCTG GAAACCGAGC TGATGAGCAC CTTGCGTGAA
CGGGCTGAAG ATGAGGCTAT CAATGTCTTT GCCCGTAATA TGCAAGATTT ACTGATGGCC
GCGCCAGCAG GTATGCGCGC GACCATGGGC CTCGATCCCG GCCTGCGTAC TGGCGTGAAA
GTCGCGGTGG TGGATGCAAC AGGCAAGCTG GTCGCTTTCG ATACCATCTA CCCACACACC
GGCCAGGCAG CAAAAGCCGC CGCCGTTGTC GCCGCCCTTT GCATCAAACA CCAGGTTGAA
CTGGTGGCTA TCGGTAACGG TACTGCCTCA CGGGAAACCG AGCGCTTCTT TGTGGAGCTA
CAGCAACAGT ACCCGGCCGT CACCGCCCAA AAAGTCATTG TCAGTGAGGC CGGTGCCTCG
GTCTATTCAG CCTCTGAATT GGCCTCGCAA GAGTTTCCTG ATCTGGATGT CTCCATCCGT
GGCGCGGTTT CCATTGCTCG CCGTCTGCAA GATCCGTTGG CTGAACTGGT AAAAATCGAT
CCGAAATCTA TCGGTGTTGG TCAGTATCAG CACGATGTCA GCCAAAGCCA ATTGGCGAAA
AAGCTGGATG CGGTGGTGGA AGACTGCGTA AACGCCGTCG GCGTGGATTT AAACACGGCT
TCGGTGCCGT TACTGACACG TGTTGCCGGT TTGACGCGCA TGATGGCACA GAACATTGTG
AACTGGCGTG ATGAGAATGG CCGCTTCCGC AACCGTGAGC AATTACTGAA AGTCAGCCGC
CTCGGGCCGA AAGCCTTCGA ACAGTGTGCA GGCTTCTTGC GTATTAACCA CGGCGATAAC
CCCTTAGACG CCTCGACAGT TCACCCAGAA GCCTATCCGG TAGTTGAGCG TATTTTAGCG
GCCACCGAGC AGGCGTTGCA GGACTTAATG GGCAATGCCA ATGCGCTGCG CAACCTTAAT
GCTCGCGATT TTACTACTGA GCGTTTTGGC GTACCAACGG TAACCGATAT TCTGCGAGAG
CTGGAAAAGC CAGGCCGTGA CCCGCGCCCT GAATTTAAAA CAGCCACCTT CGCGGAAGGG
GTGGAAACAC TGAATGACCT GACACCGGGC ATGATCCTTG AAGGCGCGGT CACTAACGTG
ACAAATTTTG GTGCTTTTGT GGATATCGGC GTTCATCAGG ATGGTTTGGT GCATATCTCT
TCACTGGCCG ATAAGTTTGT CGATGATCCA CATAAAGTGG TGAAAGCCGG CGATATCGTC
AAAGTCAAAG TGATGGAAGT GGATCTGCAA CGTAAGCGCA TCGCCCTGAC CATGCGCCTT
GATGAGCAGC CAGGTGAAAC TCACTCCCGC CGATCCAACA ATGGCACGGG TAGCGAGCGC
ACCAATAATG ACAACCGCGG GGTAAATCGC CCACATAACG ACGCGAAAGG TCATAATGCG
CCTAACCGTG CTCCGGCCAA AGGGCGATCA GATAGCAGCT CGGCGGGTAA CAGCGCCATG
AGCGATGCGC TGGCGTCGGC CTTTAAAAAG CGTTAG
|
|---|
| Protein sequence | MNEPLSRIIA SELQARPEQV ISAIRLLDEG NTVPFISRYR KEVTGGLDDI QLRQLESRLG
YLRELEDRRQ TILKSIEDQG KLTDQLAGAI NATLSKTELE DLYLPYKPKR RTRGQIAIEA
GLEPLAERLW QDPQQDPEHT ALAYVDADKG VADTKAALDG ARYILMERFA EDATLLAKVR
QYLWKNAHLV SKVVEGKEQE GAKFRDYFDH HEPIAQVPSH RALAMFRGRN EGVLQLALDP
DPQFDEPPRE SQGEQIIINH LDLRLNNAPA DGWRKAVVNW TWRIKVLLHL ETELMSTLRE
RAEDEAINVF ARNMQDLLMA APAGMRATMG LDPGLRTGVK VAVVDATGKL VAFDTIYPHT
GQAAKAAAVV AALCIKHQVE LVAIGNGTAS RETERFFVEL QQQYPAVTAQ KVIVSEAGAS
VYSASELASQ EFPDLDVSIR GAVSIARRLQ DPLAELVKID PKSIGVGQYQ HDVSQSQLAK
KLDAVVEDCV NAVGVDLNTA SVPLLTRVAG LTRMMAQNIV NWRDENGRFR NREQLLKVSR
LGPKAFEQCA GFLRINHGDN PLDASTVHPE AYPVVERILA ATEQALQDLM GNANALRNLN
ARDFTTERFG VPTVTDILRE LEKPGRDPRP EFKTATFAEG VETLNDLTPG MILEGAVTNV
TNFGAFVDIG VHQDGLVHIS SLADKFVDDP HKVVKAGDIV KVKVMEVDLQ RKRIALTMRL
DEQPGETHSR RSNNGTGSER TNNDNRGVNR PHNDAKGHNA PNRAPAKGRS DSSSAGNSAM
SDALASAFKK R
|
|---|
| |