| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpsIP31758_3884 |
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| Symbol | rsmB |
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| ID | 5388152 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pseudotuberculosis IP 31758 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009708 |
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| Strand | + |
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| Start bp | 4376896 |
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| End bp | 4378185 |
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| Gene Length | 1290 bp |
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| Protein Length | 429 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640866915 |
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| Product | 16S rRNA methyltransferase B |
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| Protein accession | YP_001402832 |
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| Protein GI | 153947745 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0144] tRNA and rRNA cytosine-C5-methylases |
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| TIGRFAM ID | [TIGR00563] ribosomal RNA small subunit methyltransferase RsmB |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.002095 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAAATA CATATAATCT CCGCAGTATC GCTGCTAAAG CAATTAGTCA GGTATTGGAT
CAGGGCCAAT CGCTCAGTGC CGTTTTGCCT GAATTACAAA AAAATATTTC CGATAAAGAT
CGCGCATTGC TGCAGGAACT GTGTTTTGGC ACTCTGCGAG TCTTACCACA GCTAGAATGG
TGTATTCAAC AACTTATGGC ACGCCCGATG ACGGGTAAAC AACGTGTTTT TCATTACCTG
ATTATGGTTG GGCTCTATCA GTTGATTTAC ACTCGGATTC CGCCACATGC GGCGTTGGCT
GAAACGGTCG AAGGCGCAAC AGTACTGAAA CGTCCACAAT TAAAAGGACT TATCAATGGT
GTATTACGCC AATTTCAGCG TCAACAAGTG GAATTACTGG AACGTGCTGT AAATAACGAT
AGCCACTATC TGCATCCTAG TTGGTTGTTG GCCCGCATTA AACAAGCCTA TCCAGCACAG
TGGCAGCAAA TTTTGGATGC CAATAACCAA AGACCGCCCA TGTGGCTACG TGTAAATCGC
CTGCATCATT CTCGTAGTGA ATACCTCGAA CTGTTAACAC AGGCTGATAT TAATGCGGAG
CCTCACCCTA TTTATCGTGA TGCTGTGCGC CTTATCACTC CTTGTGCCGT CAATCATCTA
CCTGGCTTTG AACTTGGTTG GGTAACCGTA CAAGATGCTT CGGCTCAAGG TTGTGTTGAC
CTACTCGATC CCCAAAATGG TGAGCAGATC CTTGATTTAT GTGCAGCCCC TGGAGGTAAA
ACCACTCATA TTCTGGAAGC CGCACCAAAG GCTCATGTAT TAGCCGTAGA TATTGATGAA
CAGCGACTCA GCCGAGTTAA AGAGAATTTA CAACGCCTGC AATTACAAGC CGTAGTCCGT
GTTGGTGATG GCCGAGCACC TGACACATGG TGCGGTGATC AGCAATTTGA TCGTATTCTA
TTGGATGCAC CTTGTTCTGC AACCGGTGTT ATTCGCCGCC ATCCAGATAT TAAATGGCTG
CGTCGGGACC GTGATATTTC CGAATTGGCC CAACTACAAT CAGAAATCAT TGAGGCTATT
TGGCCTAAAC TGAAACATGG TGGAGTACTA GTTTATGCTA CCTGTTCAAT ATTGCCGGAA
GAGAACCAAC AGCAGATTGC CGCTTTCCTA CAACGGCATC CCGAAGCACA GTTGACCGAA
ACCGGTACTA CAGCAGCGCC TGGTAAACAA AACCTTCCAC ATCCTGAGGA CGGTGATGGT
TTCTTCTACG CAAAGATAAT CAAAAAATAG
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| Protein sequence | MKNTYNLRSI AAKAISQVLD QGQSLSAVLP ELQKNISDKD RALLQELCFG TLRVLPQLEW
CIQQLMARPM TGKQRVFHYL IMVGLYQLIY TRIPPHAALA ETVEGATVLK RPQLKGLING
VLRQFQRQQV ELLERAVNND SHYLHPSWLL ARIKQAYPAQ WQQILDANNQ RPPMWLRVNR
LHHSRSEYLE LLTQADINAE PHPIYRDAVR LITPCAVNHL PGFELGWVTV QDASAQGCVD
LLDPQNGEQI LDLCAAPGGK TTHILEAAPK AHVLAVDIDE QRLSRVKENL QRLQLQAVVR
VGDGRAPDTW CGDQQFDRIL LDAPCSATGV IRRHPDIKWL RRDRDISELA QLQSEIIEAI
WPKLKHGGVL VYATCSILPE ENQQQIAAFL QRHPEAQLTE TGTTAAPGKQ NLPHPEDGDG
FFYAKIIKK
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